Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00734 ATGAGCAGGCCAGGAGATTGGAACTGCAGGGCGTGCAACCATTTGAACTTTCAAAGGAGGGAGTCGTGTCAGAGGTGTGGAGAGGGAAGAGGAGGAGGAGGAGGGGAGTACGTAGGGTACGGTGGCCGGATTGGCTCTTCGTTCGGGTTCACCACCGGGCCGGATGTCCGCCCTGGTGACTGGTATTGCTCGCTCGCTAACTGCGGCGCCCATAACTTCGCCAGTCGCTCCACCTGCTTCAAATGCGGAGCCTCCAAAGATGACGGCGCTTCCACTTTCGACGCCGAATTTGCCAGAATGCGACCCTTTTCCTTCTCCTCCGCCTCCGCCGCCACCTCCAGTCGCTCAAACTGGAAATCTGGAGACTGGATTTGTACCAGATTGGGTTGCAATGAGCACAACTTTGCAAGCCGAATTGAATGCTTCAGATGCAGTGCGCCGAGGGATCAATCTAGTAGCAGGTCACCATTTTCGTCCTAG 480 56.25 MSRPGDWNCRACNHLNFQRRESCQRCGEGRGGGGGEYVGYGGRIGSSFGFTTGPDVRPGDWYCSLANCGAHNFASRSTCFKCGASKDDGASTFDAEFARMRPFSFSSASAATSSRSNWKSGDWICTRLGCNEHNFASRIECFRCSAPRDQSSSRSPFSS 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34641235 34641798 - Bda002773.1 Bda01g00734 734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00734 159 Gene3D - 111 151 - -
Bda01g00734 159 Gene3D - 2 32 - -
Bda01g00734 159 Gene3D - 53 89 - -
Bda01g00734 159 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Bda01g00734 159 SUPERFAMILY Ran binding protein zinc finger-like 53 89 IPR036443 -
Bda01g00734 159 ProSitePatterns Zinc finger RanBP2-type signature. 123 144 IPR001876 -
Bda01g00734 159 ProSitePatterns Zinc finger RanBP2-type signature. 61 82 IPR001876 -
Bda01g00734 159 ProSiteProfiles Zinc finger RanBP2 type profile. 119 150 IPR001876 -
Bda01g00734 159 SUPERFAMILY Ran binding protein zinc finger-like 113 151 IPR036443 -
Bda01g00734 159 PANTHER BNAA03G57490D PROTEIN 1 152 - -
Bda01g00734 159 SMART zf_4 121 147 IPR001876 -
Bda01g00734 159 SMART zf_4 5 29 IPR001876 -
Bda01g00734 159 SMART zf_4 59 85 IPR001876 -
Bda01g00734 159 ProSiteProfiles Zinc finger RanBP2 type profile. 57 88 IPR001876 -
Bda01g00734 159 Pfam Zn-finger in Ran binding protein and others 57 86 IPR001876 -
Bda01g00734 159 Pfam Zn-finger in Ran binding protein and others 119 148 IPR001876 -
Bda01g00734 159 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Bda01g00734 159 PANTHER ZINC FINGER PROTEIN 1 152 - -
Bda01g00734 159 SUPERFAMILY Ran binding protein zinc finger-like 2 31 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00734 - - - zju:107421229 219.164
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00734 Bda-Chr1:34641235 Bda09g01053 Bda-Chr9:40750156 5.99E-12 dispersed
Bda01g00734 Bda-Chr1:34641235 Bda12g00648 Bda-Chr12:31318757 2.89E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g452 Blo01g01377 . Bda01g00734 . . Bpe02g00572 . . Cmo05g00409 Cmo12g00277 . Cma05g00396 . Car12g00309 Sed01g1363 Cpe07g00286 . Bhi04g00986 Tan02g2707 Cmetu03g1356 . . . Lcy13g1766 . . . . . . . Cone4ag1804 Cone7ag1712 . . . . . Cme03g01640 . . . . . . . . . . . . Cma12g00327 . Car05g00333 Cpe11g00340 . . . . . . . . Cla08g01315 Cam08g1775 Cec08g1357 Cco08g1477 Clacu08g1471 . Cre08g1258 Lsi08g01180 . Chy03g01140 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001025 2 6 2 1 2 1 5 2 2 2 1 1 4 3 3 5 2 4 4 1 2 3 3 2 3 2 3 5 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00734 Bda_Chr01 FPKM 30.605822 31.757282 13.713235 13.624299 11.500709 11.954216 11.775936 21.81732 20.187574