Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00738 ATGGAAGCGAATGCAGGAATGGTTGCTGGGTCCTACAAGAGAAATGAGATTGTTCGGATTCGTCACGATTCCGACGGCGGGCCAAAACCTTTGAAGCATTTGGACGGCCAAGTTTGTCAGATATGTGGTGACACTGTCGGACTCACAGCCTCGGGTGATGTATTTGTTGCGTGCAACGAATGTGCTTTCCCTGTTTGTCGGCCTTGTTATGAGTATGAGAGGAAAGATGGGAACCAGTCTTGCCCCCAGTGCAAGACTAGATACAAAAGGCACAAAGGAAGTCCGCGGGTGGATGGAGACGATGACGAGGATGATGTTGATGATATTGAAAACGAGTTCAATTATGCCCAAGGAAAGAGCAATGCAAGACGGAAGTGGCATGGAGAAGATGCTGATCTGTCATCATCGGCTAGGCACGAGTACCGTCAACCAATACCCCTTCTGACAAATGGGCAACCTATCTCTGGTGAAATTCCTGCTACACCAGACAACCAATCTGTTCGAACAAACTCAGGGCCCTTAGGTCCTTCTGAAAAAAATTCACTCAATTACATTGATCCACGACAGCCAGTTCCTGTGAGAATTGTGGATCCATCGAAAGACTTGAACTCTTATGGTCTTGGAAATGTTGACTGGAAGGAAAGAGTCGAAGGCTGGAAGCTCAAACAAGAGAAAAACCTGATGCAAGTGACAAGTAGATACCCTGAGGGGAAGGGGGATATTGAAGGTACAGGCTCTAATGGGGAAGAACTGCAAATGGCTGATGATGGTAGACAACCTTTGAGTCGCGTGGTTCCCATTTCTTCTTCTCACTTGACCCCGTACCGAGTCGTGATCATACTCCGGCTTATTATTTTGGGATTCTTCTTACAGTACCGAGTGTCACACCCTGTGAAGGACGCATATGCATTGTGGCTGACATCAGTTATCTGTGAGATTTGGTTTGCGTTATCATGGCTATTGGATCAGTTTCCTAAGTGGTCTCCCATTAATCGCGAGACCTATCTTGACAGGCTCACATTGAGATATGATCGTGACGGAGAACCATCACAGCTTGCTCCTATAGATGTTTTTGTTAGTACAGTGGATCCTCTTAAAGAGCCTCCACTCATTACAGCAAACACTGTTCTTTCCATACTTGCGGTGGATTACCCTGTTGACAAAGTCTCTTGCTATGTCTCTGACGATGGTTCAGCAATGCTGACCTTCGAGGCACTCTCTGAAACTGCAGAATTTGCAAGAAAGTGGGTGCCCTTCTGCAAGAAGCATAACATCGAGCCAAGGGCTCCTGAATTTTATTTTGCTCAGAAAATAGACTACTTAAAGGATAAGATACAGCCCTCATTTGTGAAAGAGCGACGAGCCATGAAGAGAGAGTATGAAGAATTCAAGGTTAGGGTAAACGCACTGGTCGCCAAGGCTCAGAAGATGCCCGAAGAAGGCTGGACGATGCAGGATGGTACACCATGGCCTGGAAATAATCCTAGGGATCATCCAGGAATGATCCAGGTTTTTCTAGGACATAGTGGAGGACTAGACACAGATGGAAATGAGCTTCCTAGACTTGTTTATGTTTCTCGAGAAAAAAGACCAGGCTTCCAACATCATAAGAAAGCTGGAGCCATGAATGCATTGATTCGAGTTTCAGCTGTCCTTACCAATGGAGCATACCTCCTGAATGTTGATTGTGACCACTATTTTAACAACAGCAAAGCTCTCAAGGAAGCTATGTGTTTTATGATGGATCCTGCTTTTGGAAAGAAGACTTGCTACATACAATTTCCGCAGCGATTTGACGGCATCGATTTGCACGATCGATACGCCAATCGTAATATTGTTTTCTTTGATATCAACTTGAAGGGCCTGGATGGCATCCAGGGTCCTGTTTATGTGGGAACTGGTTGTTGCTTCAATAGGCAAGCTTTATATGGGTATGATCCAGTTTTGACCGAGAAAGATTTGGAACCTAATATTATTGTTAAGAGTTGTTGTGGTCCAAGAAAGAAGGGTAAAAGTGGAAATAAGAAGTATATCGACAAAAAGAGGGCGATGAAAAGAACTGAATCTACCATACCAATCTTCAAGATGGAAGACATTGAGGACGGTGTCGAAGCTGGATATGATGATGAGAGATCACTCCTCATGTCTCAGAAGAGCTTGGAGAAGCGTTTCGGCCAGTCTCCAGTTTTTATTGCAGCAACTTTCATGGAACAGGGAGGAATTCCACCTTCAACCAATCCTGCTACTCTTCTAAAGGAAGCCATCCATGTTATTAGCTGTGGATATGAAGACAAGACAGATTGGGGCAAAGAGATTGGATGGATCTATGGCTCTGTTACGGAAGATATTTTAACTGGATTCAAGATGCATGCCCGTGGTTGGATATCAATCTATTGCATGCCTCTTCGGCCAGCATTTAAGGGGTCTGCTCCCATCAATCTTTCTGATCGGTTGAACCAGGTGCTTCGATGGGCTCTGGGTTCAATTGAGATTTTACTGAGCAGACATTGTCCCATCTGGTATGGTTACAACGGGAGACTAAAGCTTTTGGAGAGAATAGCATACATCAATACTATTGTCTACCCACTCACTTCAATCCCTCTGTTAGCTTATTGTATTCTACCTGCATTCTGTCTTCTTACTGGAAAATTCATCATTCCAGAGATAAGCAACTTTGCTAGCATGTGGTTCATCCTTCTCTTTGTATCCATCTTTGCCACCGGTATCCTTGAACTTAGATGGAGTGGAGTCAGCATTGAAGACTGGTGGAGGAATGAGCAGTTCTGGGTCATTGGGGGTACTTCAGCTCATTTGTTTGCTGTCTTCCAAGGGCTCTTGAAAGTGCTTGCTGGAATTGATACCAACTTCACTGTCACTTCAAAGGCATCTGATGAGGATGGTGAATTCTCCGAACTCTATGAGTTCAAATGGACATCTCTCCTCATCCCTCCCACCACTGTAATTATTGTGAATATGGTAGGTATTGTGGCTGGTGTTTCCTATGCCATTAACAGCGGGTACCAGTCATGGGGTCCGCTCTTTGGCAAGCTCTTCTTCGCATTATGGGTCATCGTCCATTTGTACCCGTTCCTCAAAGGTTTGCTGGGTAGGCAAAACCGTACCCCTACGATTGTCATTGTGTGGTCCATTCTCCTTGCTTCTATATTCTCCTTACTCTGGGTGCGGATCGACCCATTCACATCTGATGCTGCCAAAGCTGCAGCAAGAGGTCAATGCGGTATCAATTGCTAG 3252 45.02 MEANAGMVAGSYKRNEIVRIRHDSDGGPKPLKHLDGQVCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYAQGKSNARRKWHGEDADLSSSARHEYRQPIPLLTNGQPISGEIPATPDNQSVRTNSGPLGPSEKNSLNYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNLMQVTSRYPEGKGDIEGTGSNGEELQMADDGRQPLSRVVPISSSHLTPYRVVIILRLIILGFFLQYRVSHPVKDAYALWLTSVICEIWFALSWLLDQFPKWSPINRETYLDRLTLRYDRDGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRVNALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAFGKKTCYIQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEKDLEPNIIVKSCCGPRKKGKSGNKKYIDKKRAMKRTESTIPIFKMEDIEDGVEAGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPLRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPLTSIPLLAYCILPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGEFSELYEFKWTSLLIPPTTVIIVNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSDAAKAAARGQCGINC 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34669730 34675930 + Bda002777.1 Bda01g00738 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00738 1083 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Bda01g00738 1083 PANTHER CELLULOSE SYNTHASE 19 1083 - -
Bda01g00738 1083 MobiDBLite consensus disorder prediction 122 137 - -
Bda01g00738 1083 MobiDBLite consensus disorder prediction 234 253 - -
Bda01g00738 1083 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Bda01g00738 1083 SUPERFAMILY RING/U-box 22 111 - -
Bda01g00738 1083 Pfam Cellulose synthase 355 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bda01g00738 1083 MobiDBLite consensus disorder prediction 148 184 - -
Bda01g00738 1083 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Bda01g00738 1083 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 1083 - -
Bda01g00738 1083 Coils Coil 453 473 - -
Bda01g00738 1083 MobiDBLite consensus disorder prediction 119 138 - -
Bda01g00738 1083 MobiDBLite consensus disorder prediction 148 185 - -
Bda01g00738 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Bda01g00738 1083 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 513 650 IPR029044 -
Bda01g00738 1083 MobiDBLite consensus disorder prediction 75 107 - -
Bda01g00738 1083 SUPERFAMILY Nucleotide-diphospho-sugar transferases 369 899 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00738 Bda-Chr1:34669730 Bda03g00590 Bda-Chr3:4901375 0 dispersed
Bda14g01067 Bda-Chr14:9244160 Bda01g00738 Bda-Chr1:34669730 7.44E-16 dispersed
Bda10g00721 Bda-Chr10:41633154 Bda01g00738 Bda-Chr1:34669730 0 transposed
Bda11g00039 Bda-Chr11:481523 Bda01g00738 Bda-Chr1:34669730 0 transposed
Bda11g00870 Bda-Chr11:8572037 Bda01g00738 Bda-Chr1:34669730 0 transposed
Bda11g00940 Bda-Chr11:9195821 Bda01g00738 Bda-Chr1:34669730 0 transposed
Bda01g00738 Bda-Chr1:34669730 Bda03g00065 Bda-Chr3:718275 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00738 K10999 - vvi:100254408 2098.55