Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00741 ATGGGAGAGATGAAGGACAACGAGTATGAGGAGGAGTTCGTCGACTACGAGGAAGAAGAAGACAGGGCCCCCGACTCTGCTGGAGCCAAAGTCAATGGAGAAGCCGGCAAGAAGGGATATGTTGGGATTCACAGTTCCGGTTTTAGGGACTTCCTTTTGAAGCCAGAACTTCTACGTGCTATTGTGGATTCTGGATTTGAGCATCCTTCGGAAGGCAAATTTCCTATTCAACATGAATGTATTCCTCAAGCTATCCTGGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGAAAAACTGCTGTTTTTGTTCTGTCATCTCTTCAACAAATTGATCCAGTGCCAGGTCAAGTTTCTGCTCTTGTTCTGTGCCATACGAGGGAGTTAGCATATCAGATTTGTCACGAGTTTGAAAGATTCAGCACATACCTGGTTGATCTTAAGGTTGCTGTCTTCTATGGAGGCGTGAGTATCAAAATTCATAAGGATTTGCTTAAAAATGAATGCCCACATATTGTTGTCGGAACACCGGGGAGAATATTGGCGCTGGCAAGAGATAAGGATCTCTCTTTAAAGAATGTTAGGCATTTTATCCTGGACGAGTGTGACAAAATGCTCGAGTCTCTTGACATGAGAAGAGATGTCCAGGAGATTTTCAAGATGACTCCACACGATAAACAAGTAATGATGTTTTCTGCCACCCTCAGCAAAGAGCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCTTGCATGGTCTTGTTCAGCACTACATCAAGTTAACTGAGATGGAGAAAAACCGCAAGTTGAATGATCTACTTGATGCATTGGACTTTAATCAAGTCGTTATTTTTGTCAAAAGTGTAAGCAGAGCTGCAGAGTTGGACAAGTTACTCGTGGAATGTAATTTCCCTTCAATATGCATCCATTCAGGCATGCCTCAGGAAGAAAGGTTGACAAGGTACAAAGGTTTTAAGGAGGGACATAAGAGGATTCTTGTCGCCACAGATTTAGTGGGCAGGGGCATTGACATTGAGCGAGTGAACATTGTCATCAATTATGACATGCCGGATTCTGCTGATACTTACCTGCATAGGGTTGGGAGGGCTGGTAGGTTTGGTACCAAAGGCCTAGCAATAACATTTGTGTCATCTGCTGCTGATTCTGATATTCTCAATAATGTTCAAGAAAGGTTTGACGCAGATATCCAGGTCCTTCCTGAGCAGATTGATACCTCGACGTACAGTAAGTTTTTGCTTTCTTTTTTGTGGCATGTATATAACACATTCCTCTGTTATGTAGTTGGTTCTTTGGGCGGTTTCCTTCTTTTAGTAGAAAGGAAGTGA 1353 42.57 MGEMKDNEYEEEFVDYEEEEDRAPDSAGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFPIQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLVDLKVAVFYGGVSIKIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDILNNVQERFDADIQVLPEQIDTSTYSKFLLSFLWHVYNTFLCYVVGSLGGFLLLVERK 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34683729 34687007 - Bda002780.1 Bda01g00741 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00741 450 CDD DEADc_DDX39 45 245 - -
Bda01g00741 450 Gene3D - 42 251 IPR027417 -
Bda01g00741 450 SMART ultradead3 69 259 IPR014001 -
Bda01g00741 450 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 415 - -
Bda01g00741 450 MobiDBLite consensus disorder prediction 1 30 - -
Bda01g00741 450 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 415 - -
Bda01g00741 450 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 416 IPR001650 -
Bda01g00741 450 Pfam Helicase conserved C-terminal domain 269 376 IPR001650 -
Bda01g00741 450 SMART helicmild6 295 376 IPR001650 -
Bda01g00741 450 CDD SF2_C_DEAD 256 385 - -
Bda01g00741 450 Pfam DEAD/DEAH box helicase 74 241 IPR011545 GO:0003676|GO:0005524
Bda01g00741 450 MobiDBLite consensus disorder prediction 1 22 - -
Bda01g00741 450 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 81 254 IPR014001 -
Bda01g00741 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 388 IPR027417 -
Bda01g00741 450 Gene3D - 252 420 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00741 Bda01g00999 CCT
Bda01g00741 Bda13g01265 CCT
Bda01g00999 Bda01g00741 ECH
Bda01g00741 Bda01g00999 ECH
Bda01g00741 Bda13g01265 ECH
Bda01g00741 Bda03g00068 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00741 Bda-Chr1:34683729 Bda13g00354 Bda-Chr13:4397992 7.24E-74 dispersed
Bda01g00741 Bda-Chr1:34683729 Bda01g00999 Bda-Chr1:43582058 0 wgd
Bda01g00741 Bda-Chr1:34683729 Bda13g01265 Bda-Chr13:35043466 0 wgd
Bda01g00741 Bda-Chr1:34683729 Bda03g00068 Bda-Chr3:735133 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00741 K12812 - csv:101217346 764.607