Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00745 ATGAATCTGTGCTCTCAGGCTATAGTGATTGTGGTTTCAGCCTTCGTCTTTGTGGGGTCTCTCTTTTTTGCTCTCTTTGGAGGGTTTTTTGGTGACGGACTGTGCAGATCCGTTCTCCCCGCGTTTTTGGAGCTGTACCCATGTCGAAGCTCTTTGATTTTAGTGGTAATGAAAGTTTTTTCTCTGGGGGGCCAATATATCCAAACCCCAAGGAGGCTAACCCCTTTTTATCCCTTGGTCACCATGTGGATCTTTATTTTCCTCCTTGCAAGAGGTCACGTGTCACTGCTCCATTTATGTTCAGCAGGGAAAGGATTGAGCCAAAGGAAGAGGCCTCTATTGAAGTTCTTCCAGACGAATGCCTTTTTGAGATATTTAAACGACTTGTCTGGAGGCGAAGAAAGAAGCTCATGCTCGTCTGTTTCTAAACGTTGGCTTATGCTGTTAAGCAACATTCGTGGAGATGAATTTCATAGCTCCAAGTCTGATATTTTTTCAAAATCGAAAGATGAACTTGATCAAAAGGATGTCAAAGACGAGGAAGTCGAGAGTGAAGGATATCTTTCCAGAAGCTTGGAAGGGAAGAAGGCAACTGATGTTAGACTTGCCGCCATTTCTGTTGGAACTTCGATCCATGGTGGTCTGGGCAAGCTTATCATTCGAGGAAGCAAACATGATCGACAAGTGACAGATCTTGGACTTAGGGCGATCTCCCGTGGATGCCCCTCACTTAAGGTCCTTTCTCTTTGGAACTTGTCTTCTGTCGGAGATGAAGGGTTACGTGACATTGCCAATGGTTGCCATTTACTAGAGAAACTCGATCTCTCTGAGTGTCCTCTTATTTCTGATGAGGGTTTTCTTGAAGTTGCAAAGAATTGCCCTAATCTTACTGATATTACTGTCGAATCTTGTTCAAGAATTGGAAATGATGGTATTCAAGGTCTTGCAAAATTCTGTCCTGCACTAAAGTCAGTTTCGATCAGAAACTGTCCTCTTGTTGGGGATCAAGGAATCACAAGCTTGATATCGTCCACTTCTTTTGTCCTAAAGAAGGTCAAGCTTCACTCTGTGAACATCACTGATATGTCTCTTGCTGTTATTGGACACTATGGCAAGGCAATCACTGATCTTTCTCTTACAAACCTCATAAATGTGAGTGAGAGGGGTTTTTGGGTCATGGGCAATGGTCATGGGCTACAGATGTTGAAGTCTTTGGCAATTACATCATGCCATGGTGCGACTGATGTGGGGCTTGCAGCTGTTGGCAAGGGTAGCCCAAATCTCAAGCACTTTTGTCTGCGGAAATGCAATTTTTTATCTGACAATGGTTTGCTCACTTTCGCGCATGCTACTACTGGATCACTTGAAAACTTACATTTAGAAGAGTGCCATAGGATCACCCAAGTTGGATTTTTCGGTGTTGTTGTGAACAGTGGAGCAAAATTGAAGAGTCTTTCTCTGGTGAACTGTTTGGGCATTAAGGACCTGAGCTTGAAAATAGAATGTGTGGCCCCTTGTAAGTCTCTGCGATCGGTGGCCATTCTCAACTGTCCTGGTTTTGGCAACAACAGTTTGGCCTTACTAGGCCATCTATGCCCCCAACTTCAGCACTTGAATCTCTGTGGGCTTGAGGGAATAACTGATGCTGGATTTCTCCCCCTCTTCAAGTCCGGTGAGGCAGGTTTGATGAAGGTCAATCTCAGTGGTTGCGTCAATCTTACTGACAAATTGATTACATCCATGACTGAATATCACGGTTGGACTCTCGAGTTGCTTCACCTTGATGGCTGCCGGAAAATCTCTGATGCTAGTTTGGGAGTGATTGCAGAGAAATGCCCATTACTCAGCGATCTCGACATGTCTAAGTGTGCAATCACTGATTTTGGAGTTGCAGCCCTGGCTCAGTCCAATCAGCTCAATCTGCAAATCCTCTCTCTTTCTGGGTGTTCTTCCATATCAGACAAAAGTTTGCCTGCTATACGAAAATTAGGCGACTCACTAGTCGGTTTGAATCCTTCAACAGTGCAAGGCAATCAGCAGCGGTGCAGTTGA 2052 44.54 MNLCSQAIVIVVSAFVFVGSLFFALFGGFFGDGLCRSVLPAFLELYPCRSSLILVVMKVFSLGGQYIQTPRRLTPFYPLVTMWIFIFLLARGHVSLLHLCSAGKGLSQRKRPLLKFFQTNAFLRYLNDLSGGEERSSCSSVSKRWLMLLSNIRGDEFHSSKSDIFSKSKDELDQKDVKDEEVESEGYLSRSLEGKKATDVRLAAISVGTSIHGGLGKLIIRGSKHDRQVTDLGLRAISRGCPSLKVLSLWNLSSVGDEGLRDIANGCHLLEKLDLSECPLISDEGFLEVAKNCPNLTDITVESCSRIGNDGIQGLAKFCPALKSVSIRNCPLVGDQGITSLISSTSFVLKKVKLHSVNITDMSLAVIGHYGKAITDLSLTNLINVSERGFWVMGNGHGLQMLKSLAITSCHGATDVGLAAVGKGSPNLKHFCLRKCNFLSDNGLLTFAHATTGSLENLHLEECHRITQVGFFGVVVNSGAKLKSLSLVNCLGIKDLSLKIECVAPCKSLRSVAILNCPGFGNNSLALLGHLCPQLQHLNLCGLEGITDAGFLPLFKSGEAGLMKVNLSGCVNLTDKLITSMTEYHGWTLELLHLDGCRKISDASLGVIAEKCPLLSDLDMSKCAITDFGVAALAQSNQLNLQILSLSGCSSISDKSLPAIRKLGDSLVGLNPSTVQGNQQRCS 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34704113 34706827 + Bda002784.1 Bda01g00745 745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00745 683 Gene3D Ribonuclease Inhibitor 499 680 IPR032675 -
Bda01g00745 683 SUPERFAMILY RNI-like 455 660 - -
Bda01g00745 683 PANTHER - 120 671 - -
Bda01g00745 683 SMART LRR_CC_2 399 424 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 241 266 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 371 396 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 612 636 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 559 584 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 479 504 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 452 477 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 638 663 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 586 611 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 425 450 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 293 318 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 506 531 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 267 292 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 532 557 IPR006553 -
Bda01g00745 683 SMART LRR_CC_2 319 344 IPR006553 -
Bda01g00745 683 PANTHER UNCHARACTERIZED 120 671 - -
Bda01g00745 683 Pfam Leucine Rich repeat 267 285 IPR001611 GO:0005515
Bda01g00745 683 Pfam Leucine Rich repeat 612 634 IPR001611 GO:0005515
Bda01g00745 683 Gene3D Ribonuclease Inhibitor 118 290 IPR032675 -
Bda01g00745 683 SUPERFAMILY RNI-like 227 471 - -
Bda01g00745 683 Gene3D Ribonuclease Inhibitor 291 492 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00745 K14515 EBF1_2; EIN3-binding F-box protein - fve:101311068 756.518
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00745 Bda03g00070 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00745 Bda-Chr1:34704113 Bda02g00219 Bda-Chr2:38069460 0 dispersed
Bda09g01065 Bda-Chr9:40894874 Bda01g00745 Bda-Chr1:34704113 9.67E-06 transposed
Bda01g00745 Bda-Chr1:34704113 Bda03g00070 Bda-Chr3:756696 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005429 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00745 Bda_Chr01 FPKM 16.211853 17.440796 17.895947 17.22823 18.151724 18.148964 20.155087 15.266093 13.737053