Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00760 ATGTCAATGGAAGGAAGCGTCGTCGCGTATCCTACAGAAGCCCTTCCATGCCCAAAAACACCATTGCAGAACCCAGAAGAGTGCAAGCAGAAGACAGTGGAGGAAGACGAAGAAGATAAGGACCGAGAGAGAGAAGGAAAACCCAAACCCTCCTTAGATCTAATCAGAAGATCCAGTCAAGAACTTAATCTCATTGAAAATTTGGAGATGGTCTGTTCGACTGATCAAACATCATCGGAACCTAATCACGATGACAGCCTCGCCGGCGACACGGCGGAGCCACGAGTTTTCTCATGCAACTACTGTCAGCGAAAGTTTTACAGCTCGCAGGCGCTTGGCGGCCACCAAAACGCCCACAAACGAGAGAGAAGTCTGGCGAAAAGAGGACATCGAATTGGGTCGTCGTCATCATTTATGTCTCCGACAGCTTTAGGACACCATCCCTACTTCCATCCCCACCATTATTCCACCTTAGTATCTCTTCCCGACATCCATGGCTCCTTCAACAGATCTCTTGGAATTAAGGTTCACTCTCTGGTTAGCAAGCCTTCGGAGCAATTCCCATCATATTCTTTATTCGGAGGTGGGTTACAATCGGGACCGGCCATCGATCAACGGCCGGGAATAGGGAAGCTGAGACAGGAGATCATCGACCCTATCCGTACACATGTAGCGACCGGATTGGGTGCTAGAAGCAGCGTCGGTAGATTCGAAACGGGACGGAGGAAGTCCATGGAAAGAACAGAAGATGATCGAATCGGAGGGGGCTTCTGGGGTGGAAATGGAGGCGTGTTGATAATGTCTAAACAAGAGGAGACGAAAAATCTTGACCTATCTTTGAAGCTGTAA 849 49.12 MSMEGSVVAYPTEALPCPKTPLQNPEECKQKTVEEDEEDKDREREGKPKPSLDLIRRSSQELNLIENLEMVCSTDQTSSEPNHDDSLAGDTAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSLAKRGHRIGSSSSFMSPTALGHHPYFHPHHYSTLVSLPDIHGSFNRSLGIKVHSLVSKPSEQFPSYSLFGGGLQSGPAIDQRPGIGKLRQEIIDPIRTHVATGLGARSSVGRFETGRRKSMERTEDDRIGGGFWGGNGGVLIMSKQEETKNLDLSLKL 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34838893 34839741 - Bda002802.1 Bda01g00760 760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00760 282 MobiDBLite consensus disorder prediction 28 54 - -
Bda01g00760 282 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Bda01g00760 282 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
Bda01g00760 282 MobiDBLite consensus disorder prediction 1 57 - -
Bda01g00760 282 Gene3D Classic Zinc Finger 86 147 - -
Bda01g00760 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Bda01g00760 282 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 282 IPR044246 GO:0009788
Bda01g00760 282 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00760 - - - dzi:111300449 199.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00760 Bda-Chr1:34838893 Bda05g00490 Bda-Chr5:51683448 3.42E-47 dispersed
Bda11g00993 Bda-Chr11:9712975 Bda01g00760 Bda-Chr1:34838893 2.36E-15 dispersed
Bda01g00760 Bda-Chr1:34838893 Bda01g00769 Bda-Chr1:34999199 1.28E-159 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g525 . . Bda01g00760 . . Bpe02g00545 . . . . . . . . Sed11g1150 . . Bhi04g00040 Tan02g2755 Cmetu03g0839 . Hepe10g0223 . Lcy13g1820 . . . . . . . . . . . . . . . . . . . . . . . Sed06g2059 . . . . . . . . Bhi09g02982 Tan01g3585 Cmetu07g2142 . Hepe01g1980 Mch11g0516 . . . . . . . . . . . Cme07g00107
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003781 5 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15392 None None None None Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00760 Bda_Chr01 FPKM 8.248904 8.4703 2.484813 2.548871 52.036671 54.609779 51.441681 2.103944 1.853451