Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00763 ATGTCTTGTTCTTGTATTGGATGCCGGATGGATCGTCCTATAAATATGGTCTGCGGGTTTGCCTGTAAACAAACAACTATAATGCCATTTTTTGAAGAAATGGATTCGAAGTTGAAACCGGTGGACACTTCCCTCGAACTTAATTTCAATTCTTACTTCGCTGATACAGACAACACCCCAGAAAGAGATGTTGAAGATGAACTGAAACTTGCCTCCCCCGGAGAAATGCAGAACTCCGCCAAATTGGCTATGGAGGTGGATCGAATGAGCACAGAGACGAAGAAACTAGCCCAGACGGCAAACACCATGATTGATTTTCTGCAGAACCTACGTATGGAGTTGAAGGTCGCGAATCTAGAGAGAGAAACCCCTAATTTGAAGAAACGAAAGGCCTGGGCAGGAGATCAGTATAACAACCATTACACTGAATCAAGTTCCAACGATGAAACTTTCTCGTGTAAAAGGCCGAAAGGTCAAATTTTCAAGAACAAAGTTTCGAGGGTCTTCGTCCAGACTAACCCTTCAGATACAAGCCTGGCGGTAAAGGATGGCTATCAATGGAGGAAATATGGTCAGAAAGTAACCAGAGATAATCCCACTCCAAGAGCTTATTATAAATGCTCCTTCGCCCCCTCTTGCCCAGTAAAAAAGAAGGTCCAAAGAAGTGCAGAAGACCCATCGGTGTTAGTCGCAGTTTACGAAGGAGAACACAATCACACAAACAGAAGCAGGGACGAATTTTCTTTACCGCCAAATCTGAGGGGGAGATCTGAGCTCCTCCCTATTCCGCCATTGACGAGACCTTCAACGAGTAGAGAGTATTTCCACTTCGAGCAGCTTGGATTCGCTCAGACGTGA 858 44.87 MSCSCIGCRMDRPINMVCGFACKQTTIMPFFEEMDSKLKPVDTSLELNFNSYFADTDNTPERDVEDELKLASPGEMQNSAKLAMEVDRMSTETKKLAQTANTMIDFLQNLRMELKVANLERETPNLKKRKAWAGDQYNNHYTESSSNDETFSCKRPKGQIFKNKVSRVFVQTNPSDTSLAVKDGYQWRKYGQKVTRDNPTPRAYYKCSFAPSCPVKKKVQRSAEDPSVLVAVYEGEHNHTNRSRDEFSLPPNLRGRSELLPIPPLTRPSTSREYFHFEQLGFAQT 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34929921 34931186 - Bda002809.3 Bda01g00763 763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00763 285 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 38 248 IPR044810 GO:0003700
Bda01g00763 285 Gene3D WRKY domain 163 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda01g00763 285 SMART WRKY_cls 181 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g00763 285 SUPERFAMILY WRKY DNA-binding domain 179 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda01g00763 285 Pfam WRKY DNA -binding domain 182 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g00763 285 PANTHER WRKY TRANSCRIPTION FACTOR 40-RELATED 38 248 - -
Bda01g00763 285 Coils Coil 109 129 - -
Bda01g00763 285 ProSiteProfiles WRKY domain profile. 183 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00763 - - - rcu:8274191 207.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00763 Bda-Chr1:34929921 Bda03g00095 Bda-Chr3:899767 9.78E-85 dispersed
Bda01g00763 Bda-Chr1:34929921 Bda01g01012 Bda-Chr1:43678128 7.47E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g508 . . Bda01g00763 . . . . . . . . . . . . . . Bhi04g00045 . . . . . Lcy13g1830 . . . . . . . . . . . . . . . . . . . . . . . Sed13g1970 . . . . . . . . Bhi09g03002 Tan01g3570 Cmetu07g0299 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005027 2 3 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15393 PF03106 WRKY 2.30E-24 CL0274 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00763 Bda_Chr01 FPKM 83.192924 89.013466 81.708748 76.737228 132.379227 140.175613 138.801987 145.029373 142.89415