Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00765 ATGGAGGAAGATCAAATAGCCAACTTTGTGTCAGCATACTTGAAGAAGAAGGGTTTCAAGGAAGCTGAGCAAGCTTTTCTGGAAGAGCTGCGACTCAATAAGGCTAACTCTTCCTCTTCTCCTTCCATTGACCTTGACTTCTCCAAGCACTTACTCACTGTACCCGAGTTGGAGAATATTCCAGACCGATATCATGACGGATATAGCAGATTACGATCATGGACTGACAGTTCATTAGATTTGTACAAGAAAATGCAGCATGAGTTGCTTCGAGTGCTTTATCCGGTATTTATTCATAGTTTCATGGATCTTGTGGCTAAAGGGCATATTCAAGAAGCTCGGAAATTTTTCAATAGCTTTCGAGAAGATCATGAAATGATGCACTTAAGAGATCTTCAAAAGCTGGAGGGAGTTTTATCTCCCTCACATCTTGAGGAGATGGAGTTTGCTCATTCTCTAAGGCAGAGCAAAGTCAACATAAAGATATGTCAGTACTCTTACGAGCTGCTGCTGCAGTATCTACACAAGAATAAATCCACTACAGTTCTTGGAATTATCAATGAGCGTATTAACTTCAAAGTGTCTCCTGGACAGCCAAGCTCAATTTCTGATGATGCTGAGACAATGACGATTATTGGAAACAATCAAGAAGCATGCAATCTTATAAACAGGAGAGATGTACATTGGGGGTTGCTAGAAGATTCTTTGGAAGAACGCTTGGACAAATCAGGTGGTTTATTCTTAGATTCAGAGAAGGCAGAGGGAGACACGAAAGAAGGGGAGCTTGATGAGAATAAGAAAAGATCAATGGAGGGAGGAAAGCAGGGTGCTTCTCTCAAAAAGGTCAAGAAGGACAAGGCTATTGGATCAATAGGAAAAACTGCACGCCCTGATGGTAGTACTGCCCCTACAGCACCTCGAGTTAAACCAGAGCTGACTTTGCCCGTAATTCCAACGGAGGTGGAAGAGTCAATTCTTGAAGACTTAAGAAACCGTGTCCAGTTGAATAGTGTGGCTCTGCCATCCGTCAGTTTTTACACATTTATCAATACACATAATGGTTTAAATTGTTCGTCAATATCCCATGATGGAGCTTTGGCTGCGGGTGGATTTTCAGATTCCTCACTCAAGGTTTGGGATATAGCAAAGCTTGGACAACAGACCGGCAATTCTGTTTTGCAGGGTGAAACTGACACATTGCTTGGGGATCAAATGCCAGGACAAACTGGTGGGAGAAGATCTTATACATTATTTCAAGGTCATTCAGGGGCAGTTTACTCTGCTACTTTTAGTCCTGTTGGGGATTTTATTCTTTCCTCGTCTGCAGATTCCACAATTCGTTTGTGGAGCACTAAGCTGAATGCTAATCTTGTTTGCTACAAGGGTCACAATTACCCAGTATGGGATGTTCAGTTTAGTCCTATGGGACATTATTTTGCTAGTTCCTCTCATGATCGAACTGCAAGGATTTGGTCAATGGACAGAACACAACCTCTACGCATAATGGCAGGTCATTTGTCAGATGTGGATTGTGTGCAATGGCATGCCAACTGCAACTACATCGCCACAGGATCCAGTGACAAAACAGTGCGACTATGGGATGTGCAGAGTGGAGAATGTGTTCGAATTTTTATTGGTCACAGGAGTATGATTTTATCATTGGCTATGTCTCCCGATGGTCGATATGTTGCATCCGGTGACGAAGATGGGGCTATAATGATGTGGGACCTGTCAAGCGGCCGGTGTGTGTCCCCCATAATGGGACATTCATCGTGTGTTTGGACTCTCGCCTTCAGTTGTGAGGGTTCTCTTCTTGCATCCGGGTCTGCCGATTGCACAGTTAAATTATGGGACGTAAATTCTAGCACGAAAGGACGGAAGATTGACGAACAGTGA 1896 43.35 MEEDQIANFVSAYLKKKGFKEAEQAFLEELRLNKANSSSSPSIDLDFSKHLLTVPELENIPDRYHDGYSRLRSWTDSSLDLYKKMQHELLRVLYPVFIHSFMDLVAKGHIQEARKFFNSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYELLLQYLHKNKSTTVLGIINERINFKVSPGQPSSISDDAETMTIIGNNQEACNLINRRDVHWGLLEDSLEERLDKSGGLFLDSEKAEGDTKEGELDENKKRSMEGGKQGASLKKVKKDKAIGSIGKTARPDGSTAPTAPRVKPELTLPVIPTEVEESILEDLRNRVQLNSVALPSVSFYTFINTHNGLNCSSISHDGALAAGGFSDSSLKVWDIAKLGQQTGNSVLQGETDTLLGDQMPGQTGGRRSYTLFQGHSGAVYSATFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRTQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYVASGDEDGAIMMWDLSSGRCVSPIMGHSSCVWTLAFSCEGSLLASGSADCTVKLWDVNSSTKGRKIDEQ 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34951945 34958903 + Bda002811.1 Bda01g00765 765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 450 IPR001680 GO:0005515
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 585 IPR001680 GO:0005515
Bda01g00765 631 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 629 IPR037783 -
Bda01g00765 631 Pfam WD40 associated region in TFIID subunit, NTD2 domain 59 190 IPR007582 -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Bda01g00765 631 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 539 - -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 453 492 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 579 618 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 495 534 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 537 576 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 341 380 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 411 450 IPR001680 GO:0005515
Bda01g00765 631 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 627 IPR001680 GO:0005515
Bda01g00765 631 ProSitePatterns Trp-Asp (WD) repeats signature. 605 619 IPR019775 -
Bda01g00765 631 Gene3D - 548 630 IPR015943 GO:0005515
Bda01g00765 631 CDD WD40 351 618 - -
Bda01g00765 631 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Bda01g00765 631 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Bda01g00765 631 PRINTS G protein beta WD-40 repeat signature 605 619 IPR020472 -
Bda01g00765 631 MobiDBLite consensus disorder prediction 247 279 - -
Bda01g00765 631 SUPERFAMILY Taf5 N-terminal domain-like 50 195 IPR037264 -
Bda01g00765 631 SUPERFAMILY WD40 repeat-like 342 623 IPR036322 GO:0005515
Bda01g00765 631 ProSitePatterns Trp-Asp (WD) repeats signature. 563 577 IPR019775 -
Bda01g00765 631 Gene3D - 328 458 IPR015943 GO:0005515
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 581 - -
Bda01g00765 631 Gene3D TFIID subunit TAF5, NTD2 domain 44 195 IPR037264 -
Bda01g00765 631 PANTHER CANNONBALL-RELATED 1 629 - -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 460 501 IPR001680 GO:0005515
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 460 494 - -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 450 - -
Bda01g00765 631 ProSitePatterns Trp-Asp (WD) repeats signature. 367 381 IPR019775 -
Bda01g00765 631 CDD TAF5_NTD2 61 196 IPR007582 -
Bda01g00765 631 Gene3D - 459 547 IPR015943 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 350 380 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 418 450 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 497 534 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 457 492 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 580 618 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 538 576 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00765 K03130 TAF5; transcription initiation factor TFIID subunit 5 - csv:101214018 1039.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00765 Bda01g00995 CCT
Bda01g00765 Bda13g01268 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00765 Bda-Chr1:34951945 Bda01g01739 Bda-Chr1:53507978 2.48E-09 dispersed
Bda03g00618 Bda-Chr3:5189091 Bda01g00765 Bda-Chr1:34951945 1.61E-09 dispersed
Bda05g00285 Bda-Chr5:44692033 Bda01g00765 Bda-Chr1:34951945 3.16E-08 dispersed
Bda05g01164 Bda-Chr5:59725172 Bda01g00765 Bda-Chr1:34951945 3.73E-23 dispersed
Bda08g01230 Bda-Chr8:50263773 Bda01g00765 Bda-Chr1:34951945 2.34E-18 dispersed
Bda10g00802 Bda-Chr10:42403642 Bda01g00765 Bda-Chr1:34951945 8.43E-10 dispersed
Bda12g00683 Bda-Chr12:33278961 Bda01g00765 Bda-Chr1:34951945 2.37E-16 dispersed
Bda14g00932 Bda-Chr14:7415242 Bda01g00765 Bda-Chr1:34951945 3.01E-13 dispersed
Bda01g00765 Bda-Chr1:34951945 Bda04g00146 Bda-Chr4:3969533 9.69E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g458 . . Bda01g00765 . Bpe02g01240 . . . Cmo05g00389 Cmo12g00279 Cma01g01495 Cma05g00390 . Car12g00311 Sed07g1964 Cpe07g00288 . Bhi04g00047 Tan02g2761 Cmetu03g1346 . Hepe10g0217 . Lcy13g1832 Cla05g01750 Cam05g1863 Cec05g1875 Cco05g1939 Clacu05g1854 Cmu05g1735 Cre05g1867 Cone4ag1802 . Cone17ag1030 . Lsi04g02144 Csa03g04347 Chy04g00355 Cme03g01624 Blo17g00025 Blo18g00033 Bda01g00995 Bda13g01268 Bpe14g00575 . Bma01g01283 Bma02g00029 . Cmo01g01551 . . Cma12g00329 . Car05g00331 Cpe11g00334 Cpe02g00460 . . . . . . . Cla08g01323 Cam08g1785 Cec08g1363 Cco08g1490 Clacu08g1479 . Cre08g1268 Lsi08g01193 . Chy03g01131 Cme04g00394
Vvi4g509 . . Bda01g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed02g0871 . . . . . . . . Bhi09g03000 Tan01g3572 Cmetu07g0650 . Hepe01g1970 Mch11g0508 . . . . . . . . . . . Cme07g00115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010521 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00765 Bda_Chr01 FPKM 0.6 0.416143 1.278298 1.074197 1.80118 1.183202 1.544622 0.09843 0.0