Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00767 ATGGCTCTCGCTTTTTTCGCTCTTGCTGTTTTCCTCTACCTTGGCCTTGATCTTGACAACGCCTCCGTCTCGTCCGCATCCGCCGCTTCGTCCGAGGGCGTCGATATTACTTATGGGACGGTTTTAAAGCTGATGCACGAGAAAACCAAGTTTCGTCTTCATTCCCACGATGTCCCCTATGGTTCTGGTAGTGGGCAACAGTCAGTTACTGGTTTTCCGAATGTTGACGATTCCAATAGTTACTGGATCGTTAGGCTTGGGCCAGGATCATCTGGAAAACAAGGCGACACCATTACTAGTGGAACGATCATTAGACTGCAACACATGAGAACTAGAAAATGGCTCCACAGCCACTTGCATGCATCCCCAATATCTGGCAATCTTGAGGTTAGCTGCTATGGTGGGGAGAATGAATCTGACACTGGTGATTATTGGAGGCTTCTAATTGAAGGGACTGGGAAAACATGGAAACAAGATCAGAAAATTCGACTTCAGCATGTTGATACCAGTGGTTTCCTGCATAGTCATGACAAGAAATATACCAGAATTGCTGGAGGGCAGCAGGAGGTTTGTGGAGTGCGAGAAAAACGAGCGGATAATATCTGGTTGGCTGCAGAAGGTGTGTACCTTCCTATCGTTGAAACCAAGTAG 651 47.0 MALAFFALAVFLYLGLDLDNASVSSASAASSEGVDITYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPNVDDSNSYWIVRLGPGSSGKQGDTITSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCYGGENESDTGDYWRLLIEGTGKTWKQDQKIRLQHVDTSGFLHSHDKKYTRIAGGQQEVCGVREKRADNIWLAAEGVYLPIVETK 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34973525 34976822 + Bda002813.1 Bda01g00767 767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00767 216 Gene3D - 20 215 - -
Bda01g00767 216 SMART mir_2 95 150 IPR016093 -
Bda01g00767 216 SMART mir_2 153 207 IPR016093 -
Bda01g00767 216 SMART mir_2 33 87 IPR016093 -
Bda01g00767 216 ProSiteProfiles MIR domain profile. 153 207 IPR016093 -
Bda01g00767 216 SUPERFAMILY MIR domain 31 207 IPR036300 -
Bda01g00767 216 PANTHER STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN 1 216 - -
Bda01g00767 216 ProSiteProfiles MIR domain profile. 33 87 IPR016093 -
Bda01g00767 216 ProSiteProfiles MIR domain profile. 95 150 IPR016093 -
Bda01g00767 216 PANTHER MIR MOTIF, GLYCOSYLTRANSFERASE 39-LIKE PROTEIN-RELATED 1 216 - -
Bda01g00767 216 Pfam MIR domain 69 200 IPR016093 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00767 - - - jre:109001023 386.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00092 Bda-Chr3:881787 Bda01g00767 Bda-Chr1:34973525 4.47E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g513 . . Bda01g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005995 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00767 Bda_Chr01 FPKM 68.761246 72.025711 32.136253 33.522755 83.250275 89.363731 85.820068 66.403473 57.991234