Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00768 ATGGCTAAATTAGTCGTAGACCGTGCTTCCTCTTCCGACCGTCATTTCCGCCTCTGGACGGCTTTCTCCGGAGCTGCATTTCGCCGGAAGATTTTTTACGCAGTCAGTTGCGGTGGTAGCACCTGGCATCGGCATCACCTCTGTGGCGAGAGTCATGTCACTGAGAGTACCGTCAAAGATTTAAAGGAGAATCAACCGGCGAAGACGAAGAGACGGAGTTCGCAGTCCGAGAGGCTCTTGGATCTTCTCCGCTTGTCTGAATCTGTGGAATCCGGAGTTGATGTGGAGACGAAGAAGAAGGAAGAGGCACTCGAAGAGTTGAAGTGCACGGTGAAGGATCTGATGGCGGAGGATTCTGCTCGGAGAAAAGTGGCTGCCAGTAAAGTGAGGTTGCTCACGAAGGAGGATTCGGAGGCTAGAAAAACGCTTGCAATGCTTGGAGCAATACCTCCTTTAGTTGGCATGCTCGATTTGGAAGACAATGAGTGTCAAGTGGCTTCGCTCTATGCTCTGCTCAACCTTGGGATCGGCAACAACGAGAATAAGGCGGCCATTGTTAAAGCCGGTGCCGTTCACAAAATGCTCAATCTCATTGGATCCGAGAATGCTCTGGAACCATCATTTTCAGAAGCAATTGTTGTAAATTTTCTCGGTTTGAGTGCTTTGGACTCAAATAAACCGGTTATTGGATCATCCGGTGCAATCCCGTTCTTGGCAAAGAACTTCCAAAGCTTTCATAGAAGCAAGTGCCAAGCCAAACAAGATGCACTTCTTGCCCTATATAATCTCTCAATTTTCCCTCCAAATGTTTCTGTTATCGTAAAAACCAACTTGATTCCATTTGTACTGGATGCATTGGGTGACATGGAAGTAAGCGATAGGATCCTATTGATTCTGAGTAATGTGGTGGCGATCCCTGAAGGTCGAAAGGCAATCAATAGAGCCCCTGATGCATTCCCAATACTGGTTGATGTTTTAAATTGGACTGATTCGCCTGGATGCCAAGAGAAGGCAGCCTATATTTTAATGGTAATGGCACACAAGGCCTATGGTGATCGTCGTGCAATGATTGAAGCTGGCATTATGTCAGCATCACTTGAACTAACGCTGCTCGGGAGTCCATTGGCACAAAAGAGGGCTTCAAGAATCTTGGAATGTTTGAGAGTGGATAAAGGAAAGCAAGTGTCTACAAATTTTGGCGGAAATCTGGGTGCCGCTGTGTCTGCTCCTATTTATAGCTCTTCATCTTCGTCTAATCAGGCTATGGGTTCCAAGGAATGTTTGGAAGAATTGGAAGGCATGATGAGCGAAGAGAAGAAAGCAGTAAAGCAATTAGTACAACAGAGTTTGCTGAGCAACATGAGAAGGATTGCGAAAAGAGCTAATCTGCCTCAAGATTTTGTTCCTTCAGACCATTTTAAGACGCTCACGTCGAGTTCGACTTCAAAAAGCTTGCCCTTTTGA 1464 46.17 MAKLVVDRASSSDRHFRLWTAFSGAAFRRKIFYAVSCGGSTWHRHHLCGESHVTESTVKDLKENQPAKTKRRSSQSERLLDLLRLSESVESGVDVETKKKEEALEELKCTVKDLMAEDSARRKVAASKVRLLTKEDSEARKTLAMLGAIPPLVGMLDLEDNECQVASLYALLNLGIGNNENKAAIVKAGAVHKMLNLIGSENALEPSFSEAIVVNFLGLSALDSNKPVIGSSGAIPFLAKNFQSFHRSKCQAKQDALLALYNLSIFPPNVSVIVKTNLIPFVLDALGDMEVSDRILLILSNVVAIPEGRKAINRAPDAFPILVDVLNWTDSPGCQEKAAYILMVMAHKAYGDRRAMIEAGIMSASLELTLLGSPLAQKRASRILECLRVDKGKQVSTNFGGNLGAAVSAPIYSSSSSSNQAMGSKECLEELEGMMSEEKKAVKQLVQQSLLSNMRRIAKRANLPQDFVPSDHFKTLTSSSTSKSLPF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34986157 34987851 - Bda002814.1 Bda01g00768 768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00768 487 Gene3D - 83 213 IPR011989 -
Bda01g00768 487 MobiDBLite consensus disorder prediction 55 75 - -
Bda01g00768 487 Coils Coil 428 448 - -
Bda01g00768 487 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 487 - -
Bda01g00768 487 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 189 IPR000225 GO:0005515
Bda01g00768 487 Coils Coil 97 117 - -
Bda01g00768 487 SUPERFAMILY ARM repeat 111 435 IPR016024 -
Bda01g00768 487 Gene3D - 214 399 IPR011989 -
Bda01g00768 487 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 487 - -
Bda01g00768 487 SMART arm_5 266 304 IPR000225 GO:0005515
Bda01g00768 487 SMART arm_5 222 265 IPR000225 GO:0005515
Bda01g00768 487 SMART arm_5 136 176 IPR000225 GO:0005515
Bda01g00768 487 SMART arm_5 178 221 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00768 - - - jre:109005233 589.726
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00768 Bda13g01245 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00768 Bda-Chr1:34986157 Bda03g00091 Bda-Chr3:877445 1.45E-21 dispersed
Bda01g01712 Bda-Chr1:53180227 Bda01g00768 Bda-Chr1:34986157 9.25E-40 transposed
Bda01g00768 Bda-Chr1:34986157 Bda13g01245 Bda-Chr13:34855875 8.62E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g514 . . Bda01g00768 . . . . . . . . . . . Sed11g1146 . . Bhi04g00043 Tan02g2758 Cmetu03g1431 . Hepe10g0221 . Lcy13g1826 . . . . . . . . . . . . . . . . . . Bda13g01245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00112
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001538 3 4 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 3 2 1 2 2 3 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00768 Bda_Chr01 FPKM 26.644258 33.541496 13.122987 15.494788 47.476879 36.437737 44.41048 26.910074 19.906061