Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00808 ATGCTCGACTCACGCCGGAGAACCAGAAAGAGAATTGCTATTATCGTTCTATCCTCCATTGTTCTCGTGGGGGTTGTTCTTGCAGCTGTCTTGGGAACTGCAAACTCCAGAAATGGAGGAAAATCCAGAAATGATACGCCTCTCTCCACCTCCATCAAAGCAGTCTGCGATGTAACTTTGTACCAAGATAGTTGTTACAGCGCTCTCAATCCTTTGAAAAACTCAAGTCAGATTAGACCGGAGGAGATTTCCAAGATGATAATTCAGGCCGCCATTAATGAGATATCAAAAGCTTCAGACTACATTTTCCGTAGCGCTATAAAAAATTCTACCGATAATATGACAGTTCAAGCTTTGGAAAACTGCGAGGAGCTTCTGGATTTAGCTCTAGACCACTTGAATAATTCTCTCTCCTCTTCTGGTTCCTCTCTAACTGACGCCTTTGATGACCTACGAACATGGCTGAGCTCCGCAACTACATATCAACAAACCTGCATAGATGGGTTTGAAGACATTGATGAAGCTTTGAAAAACTCAATTTCCGGGTATTTGCAAAACTCAACTGAATATTCAAGCAACAGCCTCGCCATTGTCACGTGGCTATCGAGCTTCACCGGGGCTCTGAATCTCCGACGACTGATGGAGGCACCCGAGTGGGTGAGTCCGGCGACTCGGCGGCTGTTGCAGAGTGATTTGAGGAAGCAGGCGGACATTGTGGTGTCGAAAGATGGGTCGGGGAAGTTTAAGACGATAAAGGCGGCGCTGAAGACGGTGAAAAAAAATAGTAATAAGAGGACGGTAATTTATGTGAAGAGGGGAATTTATTACGAGAACGTGGAAGTGGAGAACACGATGTGGAATGTGGTGATGATCGGAGATGGAATGACTTCCACTATCGTTTCTGCAAGTCTTAACTTCGTTGATGGAACTCCTACTTTCTCTTCTGCAACTTTTGCTGCAAAGGGAAAAAACTTCATAGCAATCGACATGGGTTTCCGAAACACCGCCGGACCCAGCAAGCACCAAGCCGTCGCTTTCATGTCCACCTCCGACCAATCCGTCTTCTACCGCTACCACTTCAACGCCTACCAAGACACTCTCTACGCCCACTCCAACCGCCAATTCTACCGCGACTGTAACGTCTACGGCACCGTCGATTTCATCTTCGGAAACTCCGCCGTCGTCCTCCAAAACACCTTCATCTTCCCCCGATTGCCGAGTCCTGGTCAGCAAAACACAATCACAGCTCAGGGAAAGTTCGACCCTAATCAAAACACAGGTATTTCGATTCAGAACTGCTCGGTTATGCCGTTCGGAGACCTGGGTTCCACACAGACGTACCTCGGTCGGCCGTGGAAGAACTATTCGACGACGGTCTACATGCAGAGTAACTTGGGGGGTTTGATTAACCCCGACGGATGGTTACCGTGGGTAGGCGATTCAGCACCAAGCACCATTTTTTACGCCGAGTATCAGAATTATGGAGCTGGTTCTTCGACTTCGAAGAGAGTAAAGTGGAAGGGAGTGAGACAAATCAATGGAGCTCAGGCGAGTAAGTTTACAGTTTCTCAATTTCTTCAAGGGGGTAAGTGGATCTCATCGGCCGGAGTTCCGTTAAAAGCCGGTCTGTAA 1632 47.67 MLDSRRRTRKRIAIIVLSSIVLVGVVLAAVLGTANSRNGGKSRNDTPLSTSIKAVCDVTLYQDSCYSALNPLKNSSQIRPEEISKMIIQAAINEISKASDYIFRSAIKNSTDNMTVQALENCEELLDLALDHLNNSLSSSGSSLTDAFDDLRTWLSSATTYQQTCIDGFEDIDEALKNSISGYLQNSTEYSSNSLAIVTWLSSFTGALNLRRLMEAPEWVSPATRRLLQSDLRKQADIVVSKDGSGKFKTIKAALKTVKKNSNKRTVIYVKRGIYYENVEVENTMWNVVMIGDGMTSTIVSASLNFVDGTPTFSSATFAAKGKNFIAIDMGFRNTAGPSKHQAVAFMSTSDQSVFYRYHFNAYQDTLYAHSNRQFYRDCNVYGTVDFIFGNSAVVLQNTFIFPRLPSPGQQNTITAQGKFDPNQNTGISIQNCSVMPFGDLGSTQTYLGRPWKNYSTTVYMQSNLGGLINPDGWLPWVGDSAPSTIFYAEYQNYGAGSSTSKRVKWKGVRQINGAQASKFTVSQFLQGGKWISSAGVPLKAGL 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38112810 38114530 - Bda002895.1 Bda01g00808 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00808 543 Gene3D - 232 543 IPR012334 -
Bda01g00808 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 202 IPR035513 -
Bda01g00808 543 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 201 IPR006501 GO:0004857
Bda01g00808 543 Pfam Pectinesterase 237 528 IPR000070 GO:0030599|GO:0042545
Bda01g00808 543 SUPERFAMILY Pectin lyase-like 235 540 IPR011050 -
Bda01g00808 543 SMART PMEI_2 47 197 IPR006501 GO:0004857
Bda01g00808 543 CDD PMEI-like_3 54 203 - -
Bda01g00808 543 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Bda01g00808 543 PANTHER PECTINESTERASE 5 539 - -
Bda01g00808 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 203 IPR035513 -
Bda01g00808 543 Pfam Plant invertase/pectin methylesterase inhibitor 51 197 IPR006501 GO:0004857
Bda01g00808 543 PANTHER PECTINESTERASE 5 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00808 Bda-Chr1:38112810 Bda07g00904 Bda-Chr7:10638223 0 dispersed
Bda01g00808 Bda-Chr1:38112810 Bda05g00625 Bda-Chr5:54329566 3.77E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00808 - - mcha:111010791 690.649