Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00824 ATGGGGTTTGGAGGTAGAGAAGTGCGTACGCCAGCTGGTTCTTCTTCAGGTGCTAGTAACATGAGGCCTTACAACACCAACGCGACTCCTATTACCGACAAAAACAAAACGATTGCACAGTATAATGCTGACGCTGGGCTTTTGGCTGAGTTTGAGCAGTCTACTGAATCTGGCAAGTCTTTTAATTACTCGAGATCACTTTTACGTTGTCTTGAATCTGTGCCTGAAGAACAAATTACTGTTTATTTGTCGAGAATCCAAAGGGGTGGTCTGATTCAGCCCTTTGGTTGCATGATCGCTGTGGAAGAAATCAGTTTTAAAATCATCAGCTACAGTGAGAACTGCTCTGGCCTTTTGGGGCTAAAGTATCAATCAGAGTTAACACAGACAAAAAGTCTGATTGGAATTGATGTTAGAACATTTTTTACTTCTTCTTCGGCTACGTCTTTAGCGAAAGCTGCTGCATTCAGGGAGATTTCACTCTTGAACCCTGTATGGGTTTCCTCTAGGACAACCCAGAAGCCATTTTATGCGATATTGCATAGAATTGATGTGGGGATCGTGATCGATTTGGAGCCTGCAAGGTCGGGCGATCCTGCATTATCACTTGCGGGTGCAGTTCAGTCTCAGAAACTAGCTGTTCGTGCAATTTCTAGACTGCAATCTCTCCCTGGAGGTGATATTGGTGCTTTATGCGACACGGTTGTGGAAGACGTTCAGAAGCTTACTGGGTATGATAGGGTCATGGTTTACAAATTCCATGACGATGACCATGGTGAGGTTGTTTCAGAGATTAGAAGGTCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTGCCTCAGATATTCCTCAAGCTGCCCGTTTTCTGTTCAAGCAAAATCGAATTCGGATGATCTGCGATTGCCAAGCAAAGCCAGTAAAGATCATTCAAAGTGAAGATCTGAAGCAGTCTCTATGCTTGGTCAATTCAACTCTTCGATCACCTCATGGCTGCCATACTCAATATATGGCCAACATGGGCTCTATGGCATCGCTAGTAATGGCAGTCATCATAAATAGTAACAAGGGAACGACAAAGCTTTGGGGACTAGTTGTGTGTCACCACACCTCTTCCCGATACATCCCTTTCCCTCTTCGTTATGCTTGTGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGGCATTGCAGTTGATGGAAAAGAAAATTCTCAAAACTCAAACCTTACTCTGTGATATGCTCCTTCGAGATGCTCCTTATAGTCTAATGACTCAATCTCCGAGCATTATGGATCTTGTGAAATGTGATGGGGCTGCATTGTACTACGGCGGGACGTGTTGGCTTCTGGGTGTCACACCATCTGAATCACAAGTTGTAGATATTGCAGAGTGGCTTCTTTGTAATCATGGGGATTCTAGTGGGTTGAGCACGGATAGTTTAGCCGATGCTGGATATCCAGGTGCAGCTTCGCTGGGCGATGCAGTGTGTGGCATGGCAGCAGCAAGAATCTCGTTGAAGGATTTCTTATTCTGGTTCAGATCTCATACGGCTAAGGAAGTCAAGTGGGGAGGAGCAAAACATCATCCAAAAGACAAGGATGATGGTGGAAAAATGCACCCAAGGTCGTCTTTCAATGCCTTTCTTGAAGTTGTCAAAAGTAGAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCATTCATTCTCTGCAACTTATAATGAGAGACTCGTTTCAGGAAATCGGAAACAGCAGTGAAAAAGGTTTTGGTAGTGCCCAGCTGAGTGATTCTAAGATGCAGGGTGTGGATGAACTCAGCTCGGCTGCATGGGAAATAGTTAGATTGATTGAGACAGCCATGGTTCCAATTTTTGGGGTTGATACAGCAGGGCTAATTAATGGATGGAATACTAAAATTTCTGAACTGACAGGACTAGATTCTAGTAAAGCCATGGGAAAATCTTTGGTGGATGAAATTGCTCACGAGGATTCACGGCAAGTGGTTGGAAGTCTCATCAGTCGTGCTTTGCAAGGTGAAGAAGAAAAAGATGTTGAGTTGAAACTGAGAAATTTTATGGATAATAAAAGAAACTCCGCCTTGTACATTATGGTCAACTCCTGCACAAGCAGAGACAGCAAGAACAAAGTGATTGGTGTTTGCTTCGTGGGTCAAGATATTACATCGGAGAAAGTCGTTATGGATAAATTTATTCGACTCGAAGGAGACTACAAAGCTATAATTCAAAGTCTTAACCCTTTGATTCCACCCATATTTGCCTCTGATGAGAATGCTTGCTGCTCAGAGTGGAATGCAGCCATGGAAAAACTAACAGGCTGGAAACGAGATGAAGTAATAGGAAAAATGCTGCCAGGGGAAATTTTCGGAACTTTCTGTCAATTGAAAGGCCAAGATACGTTGACCAAGTTTATGATTTCACTTTATAAAACCATTGGTGGTCAAGAAACTGAGGACCTTCCATTTGGATTTTTTGATCGAAAAGGAATATTTGTGAAGGTGTTCTTGACGGCAAACAAGAGGACTGATGGCGATGGAGAGATCATCGGCTGTTTCTGCTTCTTGCAGATTGTTGTGCCAGAAGGGTATCAAGCTGCAGCAAGAACATATGGAGGATGTTGGAGAAAGCTTTCTGCAATTGACGGAGTTGGCATATATTCAACAGGAGATAAAGAATCCTTTGAATGGCATTAG 2724 43.25 MGFGGREVRTPAGSSSGASNMRPYNTNATPITDKNKTIAQYNADAGLLAEFEQSTESGKSFNYSRSLLRCLESVPEEQITVYLSRIQRGGLIQPFGCMIAVEEISFKIISYSENCSGLLGLKYQSELTQTKSLIGIDVRTFFTSSSATSLAKAAAFREISLLNPVWVSSRTTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPASDIPQAARFLFKQNRIRMICDCQAKPVKIIQSEDLKQSLCLVNSTLRSPHGCHTQYMANMGSMASLVMAVIINSNKGTTKLWGLVVCHHTSSRYIPFPLRYACEFLMQAFGLQLYMELQLALQLMEKKILKTQTLLCDMLLRDAPYSLMTQSPSIMDLVKCDGAALYYGGTCWLLGVTPSESQVVDIAEWLLCNHGDSSGLSTDSLADAGYPGAASLGDAVCGMAAARISLKDFLFWFRSHTAKEVKWGGAKHHPKDKDDGGKMHPRSSFNAFLEVVKSRSLPWEVSEINAIHSLQLIMRDSFQEIGNSSEKGFGSAQLSDSKMQGVDELSSAAWEIVRLIETAMVPIFGVDTAGLINGWNTKISELTGLDSSKAMGKSLVDEIAHEDSRQVVGSLISRALQGEEEKDVELKLRNFMDNKRNSALYIMVNSCTSRDSKNKVIGVCFVGQDITSEKVVMDKFIRLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKRDEVIGKMLPGEIFGTFCQLKGQDTLTKFMISLYKTIGGQETEDLPFGFFDRKGIFVKVFLTANKRTDGDGEIIGCFCFLQIVVPEGYQAAARTYGGCWRKLSAIDGVGIYSTGDKESFEWH 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38924388 38927537 + Bda002926.1 Bda01g00824 824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00824 907 Pfam PAS fold 747 866 IPR013767 GO:0006355
Bda01g00824 907 Pfam PAS fold 617 731 IPR013767 GO:0006355
Bda01g00824 907 SUPERFAMILY GAF domain-like 406 585 - -
Bda01g00824 907 SUPERFAMILY GAF domain-like 207 394 - -
Bda01g00824 907 Pfam Phytochrome region 411 584 IPR013515 GO:0006355|GO:0009584
Bda01g00824 907 SUPERFAMILY PYP-like sensor domain (PAS domain) 619 727 IPR035965 -
Bda01g00824 907 Gene3D - 403 576 IPR043150 -
Bda01g00824 907 ProSiteProfiles PAC domain profile. 687 743 IPR000700 -
Bda01g00824 907 Pfam GAF domain 227 398 IPR003018 GO:0005515
Bda01g00824 907 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Bda01g00824 907 CDD PAS 626 731 IPR000014 -
Bda01g00824 907 CDD PAS 758 866 IPR000014 -
Bda01g00824 907 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 196 IPR035965 -
Bda01g00824 907 SUPERFAMILY PYP-like sensor domain (PAS domain) 730 865 IPR035965 -
Bda01g00824 907 TIGRFAM sensory_box: PAS domain S-box protein 620 735 IPR000014 -
Bda01g00824 907 ProSitePatterns Phytochrome chromophore attachment site signature. 327 336 IPR013516 -
Bda01g00824 907 MobiDBLite consensus disorder prediction 1 30 - -
Bda01g00824 907 Pfam PAS fold 82 194 IPR013654 GO:0006355
Bda01g00824 907 Gene3D - 208 559 IPR029016 -
Bda01g00824 907 Gene3D PAS domain 616 735 - -
Bda01g00824 907 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 PRINTS Phytochrome signature 242 261 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 PRINTS Phytochrome signature 327 348 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 PRINTS Phytochrome signature 142 164 IPR001294 GO:0006355|GO:0009584
Bda01g00824 907 ProSiteProfiles PAS repeat profile. 613 684 IPR000014 -
Bda01g00824 907 Gene3D PAS domain 760 869 - -
Bda01g00824 907 SMART gaf_1 227 408 IPR003018 GO:0005515
Bda01g00824 907 MobiDBLite consensus disorder prediction 12 30 - -
Bda01g00824 907 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 227 388 IPR016132 -
Bda01g00824 907 Gene3D PAS domain 85 330 - -
Bda01g00824 907 SMART pas_2 615 682 IPR000014 -
Bda01g00824 907 SMART pas_2 746 815 IPR000014 -
Bda01g00824 907 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 875 - -
Bda01g00824 907 PANTHER PHYTOCHROME E 34 875 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00824 K12123 PHYE; phytochrome E - tcc:18596568 1357.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00824 Bda-Chr1:38924388 Bda11g00500 Bda-Chr11:5316805 0 dispersed
Bda01g00824 Bda-Chr1:38924388 Bda07g00948 Bda-Chr7:11021123 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01830 . 533 1712 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1443.7
Bda14g00969 . 504 1648 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1357.0
Bda13g00598 . 305 1278 Histidine Kinase Gene Family AT2G01830 51.7 1.5e-270 929.5
Bda06g00425 . 197 1076 Histidine Kinase Gene Family AT2G01830 53.3 6.4e-250 860.9
Bda01g00649 . 1 1022 Histidine Kinase Gene Family AT5G10720 54.8 3.5e-284 974.5
Bda01g01665 . 2 1120 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1753.0
Bda06g00414 . 12 1121 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1250.7
Bda11g00500 CCT 29 1120 Histidine Kinase Gene Family AT1G09570 53.0 0.0e+00 1164.1
Bda01g00824 . 36 875 Histidine Kinase Gene Family AT1G09570 54.3 2.6e-265 912.1
Bda08g00333 CCT 1 680 Histidine Kinase Gene Family AT1G09570 52.1 6.9e-202 701.4
Bda11g00500 CCT 30 1061 Histidine Kinase Gene Family AT2G18790 76.6 0.0e+00 1604.0
Bda07g00948 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1223.8
Bda01g00824 . 15 877 Histidine Kinase Gene Family AT2G18790 66.0 0.0e+00 1152.9
Bda06g00414 . 23 1076 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1114.8
Bda01g01665 . 22 1055 Histidine Kinase Gene Family AT2G18790 51.0 1.0e-306 1049.7
Bda08g00333 CCT 1 616 Histidine Kinase Gene Family AT2G18790 73.8 3.0e-269 925.2
Bda06g00414 . 10 1119 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1400.6
Bda11g00500 CCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1123.6
Bda01g01665 . 10 1115 Histidine Kinase Gene Family AT5G35840 50.5 0.0e+00 1103.6
Bda01g00824 . 40 871 Histidine Kinase Gene Family AT5G35840 52.1 1.1e-255 880.2
Bda11g00500 CCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1639.0
Bda07g00948 . 36 1107 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1250.0
Bda06g00414 . 24 1118 Histidine Kinase Gene Family AT4G16250 52.2 0.0e+00 1135.6
Bda01g00824 . 35 875 Histidine Kinase Gene Family AT4G16250 64.7 0.0e+00 1115.9
Bda08g00333 CCT 1 676 Histidine Kinase Gene Family AT4G16250 71.4 7.2e-287 983.8
Bda07g00948 . 14 1108 Histidine Kinase Gene Family AT4G18130 60.6 0.0e+00 1332.0
Bda11g00500 CCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1252.7
Bda01g00824 . 14 871 Histidine Kinase Gene Family AT4G18130 68.5 0.0e+00 1168.7
Bda08g00333 CCT 1 677 Histidine Kinase Gene Family AT4G18130 54.3 1.6e-211 733.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00824 Bda_Chr01 FPKM 3.677966 4.240014 8.007144 9.388105 4.40948 3.936199 5.323714 5.175812 5.51074