Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bda01g00824	ATGGGGTTTGGAGGTAGAGAAGTGCGTACGCCAGCTGGTTCTTCTTCAGGTGCTAGTAACATGAGGCCTTACAACACCAACGCGACTCCTATTACCGACAAAAACAAAACGATTGCACAGTATAATGCTGACGCTGGGCTTTTGGCTGAGTTTGAGCAGTCTACTGAATCTGGCAAGTCTTTTAATTACTCGAGATCACTTTTACGTTGTCTTGAATCTGTGCCTGAAGAACAAATTACTGTTTATTTGTCGAGAATCCAAAGGGGTGGTCTGATTCAGCCCTTTGGTTGCATGATCGCTGTGGAAGAAATCAGTTTTAAAATCATCAGCTACAGTGAGAACTGCTCTGGCCTTTTGGGGCTAAAGTATCAATCAGAGTTAACACAGACAAAAAGTCTGATTGGAATTGATGTTAGAACATTTTTTACTTCTTCTTCGGCTACGTCTTTAGCGAAAGCTGCTGCATTCAGGGAGATTTCACTCTTGAACCCTGTATGGGTTTCCTCTAGGACAACCCAGAAGCCATTTTATGCGATATTGCATAGAATTGATGTGGGGATCGTGATCGATTTGGAGCCTGCAAGGTCGGGCGATCCTGCATTATCACTTGCGGGTGCAGTTCAGTCTCAGAAACTAGCTGTTCGTGCAATTTCTAGACTGCAATCTCTCCCTGGAGGTGATATTGGTGCTTTATGCGACACGGTTGTGGAAGACGTTCAGAAGCTTACTGGGTATGATAGGGTCATGGTTTACAAATTCCATGACGATGACCATGGTGAGGTTGTTTCAGAGATTAGAAGGTCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTGCCTCAGATATTCCTCAAGCTGCCCGTTTTCTGTTCAAGCAAAATCGAATTCGGATGATCTGCGATTGCCAAGCAAAGCCAGTAAAGATCATTCAAAGTGAAGATCTGAAGCAGTCTCTATGCTTGGTCAATTCAACTCTTCGATCACCTCATGGCTGCCATACTCAATATATGGCCAACATGGGCTCTATGGCATCGCTAGTAATGGCAGTCATCATAAATAGTAACAAGGGAACGACAAAGCTTTGGGGACTAGTTGTGTGTCACCACACCTCTTCCCGATACATCCCTTTCCCTCTTCGTTATGCTTGTGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGGCATTGCAGTTGATGGAAAAGAAAATTCTCAAAACTCAAACCTTACTCTGTGATATGCTCCTTCGAGATGCTCCTTATAGTCTAATGACTCAATCTCCGAGCATTATGGATCTTGTGAAATGTGATGGGGCTGCATTGTACTACGGCGGGACGTGTTGGCTTCTGGGTGTCACACCATCTGAATCACAAGTTGTAGATATTGCAGAGTGGCTTCTTTGTAATCATGGGGATTCTAGTGGGTTGAGCACGGATAGTTTAGCCGATGCTGGATATCCAGGTGCAGCTTCGCTGGGCGATGCAGTGTGTGGCATGGCAGCAGCAAGAATCTCGTTGAAGGATTTCTTATTCTGGTTCAGATCTCATACGGCTAAGGAAGTCAAGTGGGGAGGAGCAAAACATCATCCAAAAGACAAGGATGATGGTGGAAAAATGCACCCAAGGTCGTCTTTCAATGCCTTTCTTGAAGTTGTCAAAAGTAGAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCATTCATTCTCTGCAACTTATAATGAGAGACTCGTTTCAGGAAATCGGAAACAGCAGTGAAAAAGGTTTTGGTAGTGCCCAGCTGAGTGATTCTAAGATGCAGGGTGTGGATGAACTCAGCTCGGCTGCATGGGAAATAGTTAGATTGATTGAGACAGCCATGGTTCCAATTTTTGGGGTTGATACAGCAGGGCTAATTAATGGATGGAATACTAAAATTTCTGAACTGACAGGACTAGATTCTAGTAAAGCCATGGGAAAATCTTTGGTGGATGAAATTGCTCACGAGGATTCACGGCAAGTGGTTGGAAGTCTCATCAGTCGTGCTTTGCAAGGTGAAGAAGAAAAAGATGTTGAGTTGAAACTGAGAAATTTTATGGATAATAAAAGAAACTCCGCCTTGTACATTATGGTCAACTCCTGCACAAGCAGAGACAGCAAGAACAAAGTGATTGGTGTTTGCTTCGTGGGTCAAGATATTACATCGGAGAAAGTCGTTATGGATAAATTTATTCGACTCGAAGGAGACTACAAAGCTATAATTCAAAGTCTTAACCCTTTGATTCCACCCATATTTGCCTCTGATGAGAATGCTTGCTGCTCAGAGTGGAATGCAGCCATGGAAAAACTAACAGGCTGGAAACGAGATGAAGTAATAGGAAAAATGCTGCCAGGGGAAATTTTCGGAACTTTCTGTCAATTGAAAGGCCAAGATACGTTGACCAAGTTTATGATTTCACTTTATAAAACCATTGGTGGTCAAGAAACTGAGGACCTTCCATTTGGATTTTTTGATCGAAAAGGAATATTTGTGAAGGTGTTCTTGACGGCAAACAAGAGGACTGATGGCGATGGAGAGATCATCGGCTGTTTCTGCTTCTTGCAGATTGTTGTGCCAGAAGGGTATCAAGCTGCAGCAAGAACATATGGAGGATGTTGGAGAAAGCTTTCTGCAATTGACGGAGTTGGCATATATTCAACAGGAGATAAAGAATCCTTTGAATGGCATTAG	2724	43.25	MGFGGREVRTPAGSSSGASNMRPYNTNATPITDKNKTIAQYNADAGLLAEFEQSTESGKSFNYSRSLLRCLESVPEEQITVYLSRIQRGGLIQPFGCMIAVEEISFKIISYSENCSGLLGLKYQSELTQTKSLIGIDVRTFFTSSSATSLAKAAAFREISLLNPVWVSSRTTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPASDIPQAARFLFKQNRIRMICDCQAKPVKIIQSEDLKQSLCLVNSTLRSPHGCHTQYMANMGSMASLVMAVIINSNKGTTKLWGLVVCHHTSSRYIPFPLRYACEFLMQAFGLQLYMELQLALQLMEKKILKTQTLLCDMLLRDAPYSLMTQSPSIMDLVKCDGAALYYGGTCWLLGVTPSESQVVDIAEWLLCNHGDSSGLSTDSLADAGYPGAASLGDAVCGMAAARISLKDFLFWFRSHTAKEVKWGGAKHHPKDKDDGGKMHPRSSFNAFLEVVKSRSLPWEVSEINAIHSLQLIMRDSFQEIGNSSEKGFGSAQLSDSKMQGVDELSSAAWEIVRLIETAMVPIFGVDTAGLINGWNTKISELTGLDSSKAMGKSLVDEIAHEDSRQVVGSLISRALQGEEEKDVELKLRNFMDNKRNSALYIMVNSCTSRDSKNKVIGVCFVGQDITSEKVVMDKFIRLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKRDEVIGKMLPGEIFGTFCQLKGQDTLTKFMISLYKTIGGQETEDLPFGFFDRKGIFVKVFLTANKRTDGDGEIIGCFCFLQIVVPEGYQAAARTYGGCWRKLSAIDGVGIYSTGDKESFEWH	907

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	38924388	38927537	+	Bda002926.1	Bda01g00824	824

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bda01g00824	907	Pfam	PAS fold	747	866	IPR013767	GO:0006355
Bda01g00824	907	Pfam	PAS fold	617	731	IPR013767	GO:0006355
Bda01g00824	907	SUPERFAMILY	GAF domain-like	406	585	-	-
Bda01g00824	907	SUPERFAMILY	GAF domain-like	207	394	-	-
Bda01g00824	907	Pfam	Phytochrome region	411	584	IPR013515	GO:0006355\|GO:0009584
Bda01g00824	907	SUPERFAMILY	PYP-like sensor domain (PAS domain)	619	727	IPR035965	-
Bda01g00824	907	Gene3D	-	403	576	IPR043150	-
Bda01g00824	907	ProSiteProfiles	PAC domain profile.	687	743	IPR000700	-
Bda01g00824	907	Pfam	GAF domain	227	398	IPR003018	GO:0005515
Bda01g00824	907	ProSiteProfiles	PAS repeat profile.	747	799	IPR000014	-
Bda01g00824	907	CDD	PAS	626	731	IPR000014	-
Bda01g00824	907	CDD	PAS	758	866	IPR000014	-
Bda01g00824	907	SUPERFAMILY	PYP-like sensor domain (PAS domain)	86	196	IPR035965	-
Bda01g00824	907	SUPERFAMILY	PYP-like sensor domain (PAS domain)	730	865	IPR035965	-
Bda01g00824	907	TIGRFAM	sensory_box: PAS domain S-box protein	620	735	IPR000014	-
Bda01g00824	907	ProSitePatterns	Phytochrome chromophore attachment site signature.	327	336	IPR013516	-
Bda01g00824	907	MobiDBLite	consensus disorder prediction	1	30	-	-
Bda01g00824	907	Pfam	PAS fold	82	194	IPR013654	GO:0006355
Bda01g00824	907	Gene3D	-	208	559	IPR029016	-
Bda01g00824	907	Gene3D	PAS domain	616	735	-	-
Bda01g00824	907	PRINTS	Phytochrome signature	513	532	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	PRINTS	Phytochrome signature	546	564	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	PRINTS	Phytochrome signature	729	749	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	PRINTS	Phytochrome signature	428	448	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	PRINTS	Phytochrome signature	242	261	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	PRINTS	Phytochrome signature	327	348	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	PRINTS	Phytochrome signature	709	726	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	PRINTS	Phytochrome signature	616	632	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	PRINTS	Phytochrome signature	635	650	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	PRINTS	Phytochrome signature	142	164	IPR001294	GO:0006355\|GO:0009584
Bda01g00824	907	ProSiteProfiles	PAS repeat profile.	613	684	IPR000014	-
Bda01g00824	907	Gene3D	PAS domain	760	869	-	-
Bda01g00824	907	SMART	gaf_1	227	408	IPR003018	GO:0005515
Bda01g00824	907	MobiDBLite	consensus disorder prediction	12	30	-	-
Bda01g00824	907	ProSiteProfiles	Phytochrome chromophore attachment site domain profile.	227	388	IPR016132	-
Bda01g00824	907	Gene3D	PAS domain	85	330	-	-
Bda01g00824	907	SMART	pas_2	615	682	IPR000014	-
Bda01g00824	907	SMART	pas_2	746	815	IPR000014	-
Bda01g00824	907	PANTHER	TWO-COMPONENT HISTIDINE KINASE	34	875	-	-
Bda01g00824	907	PANTHER	PHYTOCHROME E	34	875	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bda01g00824	Bda-Chr1:38924388	Bda11g00500	Bda-Chr11:5316805	0	dispersed
	Bda01g00824	Bda-Chr1:38924388	Bda07g00948	Bda-Chr7:11021123	0	wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bda01g00824	K12123		-	tcc:18596568	1357.43