Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00846 ATGGCGGATTCCAACAAAAAAACCAGTGTCAACAAGACAGATAAAGCCGGTCTTCTCCTTGGACGCTATGAGGTTGGCAAGCTTCTCGGCCAAGGGACATTCGCGAAAGTCTACCGCGCCCGCAACATAAAGTCAGATGAAATCGTCGCCATTAAAGTCCTCGACAAGGAGAAGATCCAAAAAAATGGCCTCATCGCCCACATCAAACGAGAAATCTCGATCCTCCGCCGTCTCCGCCACCCGAATATTGTCCGGCTCTTCGAAGTTATGGCGACCAAAGGGAAGATCTACTTCGTAATGGAGTATGTTCGAGGTGGCGAGCTTTTCAACAAAGTGGCAAAAGGACGACTAAGAGAAGAACAAGCTCGCAAGTACTTCCAACAGCTAATCTCCGCCGTCGGATTCTGTCATTCGCGAGGAGTCTACCATCGGGATCTTAAACCGGAGAATCTCCTTCTAGACGAAAACGGCGACCTAAAAGTCTCCGATTTCGGTCTTAGTGCCGTCTCCGATCAGATTCGGCAGGACGGTCTCTTCCACACATTTTGCGGTACACCGGCGTACGTTGCACCGGAAGTTTTGGCCAGAAAGGGTTATGAAGCTTCAAAATTCGACATATGGTCTTGTGGAATTATTCTCTTCGTTTTAATGGCCGGATATTTGCCATTTAACGATCCAAATATCATGCAAATGTATAAAAAAATTTATCGGGGAGAATTCCGATCACCTAAATGGTTCTCGCCGGAGCTAACCCGGCTACTGAAACGTCTCCTCGATGTAAATCCAGGAACCCGGATTACAATAGCTGAGATTATGGAAAACAAATGGTTCAAAAAAGGGTTCAAGCAGGTAAAATTTTACATAGAAGACGACAAGCTCTGCAACATCGAAGATGCCGGCGAACATTTTGATTCTTCGCCGGAAAGAGAGCCGAAGACAATGGACAAGTGCAGGAAACGTTCGCTGTTAACTCGTCCGGCGAGCTTGAACGCGTTTGATATAATTTCATTCTCGCGAGGCTTCGATCTTTCTTCGCTCTTTGAGGATAACGGGGAGGAAGCGAGGGTGATTACCGGAACTCCGGTGAAGAAGATTATAGCGAAGTTGGAGGAGATAGCGAAGGTGGTGAGTTTTACAGTGAGGAAGAAGGATTGCAGAGTCAGAATGGAGGGGACGAGGGAAGGAGAGAGAGGTCCGTTGAGTATAGAGGCGGAGATATTTGAGTTGACGCCGTCGTTGATGGTTGTGGAGGTGAAGAAGAAAGGAGGAGATAAAATAGAGTATGAACAGTTTTGTAAAAGAGAATTGACGCCATTGTTGCGCAGCATGGAGCTCCATGAATCTCCATCTTCCTCCCATTTACCCTCTGATTCTGAATAA 1380 46.88 MADSNKKTSVNKTDKAGLLLGRYEVGKLLGQGTFAKVYRARNIKSDEIVAIKVLDKEKIQKNGLIAHIKREISILRRLRHPNIVRLFEVMATKGKIYFVMEYVRGGELFNKVAKGRLREEQARKYFQQLISAVGFCHSRGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEASKFDIWSCGIILFVLMAGYLPFNDPNIMQMYKKIYRGEFRSPKWFSPELTRLLKRLLDVNPGTRITIAEIMENKWFKKGFKQVKFYIEDDKLCNIEDAGEHFDSSPEREPKTMDKCRKRSLLTRPASLNAFDIISFSRGFDLSSLFEDNGEEARVITGTPVKKIIAKLEEIAKVVSFTVRKKDCRVRMEGTREGERGPLSIEAEIFELTPSLMVVEVKKKGGDKIEYEQFCKRELTPLLRSMELHESPSSSHLPSDSE 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 40647996 40649375 + Bda002967.1 Bda01g00846 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00846 459 Gene3D Transferase(Phosphotransferase) domain 1 13 326 - -
Bda01g00846 459 CDD CIPK_C 330 441 - -
Bda01g00846 459 ProSiteProfiles Protein kinase domain profile. 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00846 459 Pfam NAF domain 326 382 IPR004041 GO:0007165
Bda01g00846 459 Gene3D Kinase associated domain 1, KA1 327 443 - -
Bda01g00846 459 ProSiteProfiles NAF domain profile. 324 348 IPR018451 GO:0007165
Bda01g00846 459 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Bda01g00846 459 SUPERFAMILY Protein kinase-like (PK-like) 19 290 IPR011009 -
Bda01g00846 459 PANTHER - 1 447 - -
Bda01g00846 459 SMART serkin_6 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00846 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Bda01g00846 459 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00846 459 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00846 Bda-Chr1:40647996 Bda01g00868 Bda-Chr1:41457114 0 dispersed
Bda01g00846 Bda-Chr1:40647996 Bda02g00137 Bda-Chr2:19715219 2.99E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69429 PF00069 Pkinase 4.40E-77 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00846 - - jre:109011279 687.182