Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00863 ATGACAGAACCCTCTAAAGTGATCCATGTGCGAAATGTGGGCCATGAAATCTCTGACAATGATCTGCTTCAACTGTTCCAGCCATTTGGTGTCATAACTAAGCTTGTAATGCTTCGTGCAAAAAATCAGGCTCTCATCCAAATGCAAGATATTCCTTCTGCAGTCAATGCTTTACAATTCTATGCAAATGTTCAACCGACCATAAGGGGAAGAAATGTTTATGTTCAATTCTCATCTCATCAAGAACTTACTACAATGGAACAAAATACTCAAGGACGAGTAGACGAGCCAAATCGTATTCTCTTAGTCACAATCCATCATATGCTATATCCAATAACCGTGGACGTGCTTCATCAAGTGTTTTTCCCTCATGGATTTGTGGAAAAGATAGTCACATTCCAGAAGTCAGCTGGTTTTCAGGCCCTCATTCAGTATCAATCACGGCAAAGCGCTGTCTCCGCCAGAACTGCGCTGCAGGGGCGTAATATCTACGATGGTTGCTGTCAACTGGACATTCAATTCTCCAATCTAGATGAGTTACAAGTAAATTACAACAATGAACGATCTAGGGATTTTACAAACCCAAACTTACCCTCTGAACAAAGAGGCAGATCCTCCCAGCCTGGGTATGGTGATGCAGGAGGAATGTATGGCATTCAATCATCAGGTATGGCCAATGCTGCTGCAGTTGCAGCTGCCTTTGGAGGAGTTTTGCCTCCTGGTGTGAGCGGGACAAATGACAGGTGTACGATTCTTATTTCAAACTTCGATCCTGATAGAATAGATGAGGATAAGCTCTTCAACTTATTCTCCATATATGGCAACATTGTAAGAATTAAACTCCTCCGAAATAAACCAGATCACGCACTGGTTCAGATGGGAGATGGGTTCCAGGCTGAATTAGCAGTTCACTTCCTAAAGGGAGCCTTGTTGTTCGGAAAACTACTGGAAGTAAACTTCTCGAAATATCCAAATATTACTCAAGGAGCCGATACTCATGAGTATGTAAATTCAAATCTAAATCGCTTCAATCGAAATGCTGCAAAGAACTACAGGTACTGCTGTTCCCCAACAAAGATGATCCATATTTCCTCCCTCCCCCAAGAAGTCACTGAGGAGGAGATTGTGAACCTCCTTGAGGAGCATGGCAGCATTGTCAACACCAAGCTATTTGAGATGAATGGAAAGAATCAGGCCTTGGTTATGTTTGAAACTGAAGAGCAGGCCACTGAAGCCCTTGTCTGCAAGCACGCCACCTCAATTGGCGGCTCTATTATGCGGATTTCCTTTTCCCAATTGCAGGGAATCTAA 1311 43.1 MTEPSKVIHVRNVGHEISDNDLLQLFQPFGVITKLVMLRAKNQALIQMQDIPSAVNALQFYANVQPTIRGRNVYVQFSSHQELTTMEQNTQGRVDEPNRILLVTIHHMLYPITVDVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPSEQRGRSSQPGYGDAGGMYGIQSSGMANAAAVAAAFGGVLPPGVSGTNDRCTILISNFDPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKLLEVNFSKYPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHISSLPQEVTEEEIVNLLEEHGSIVNTKLFEMNGKNQALVMFETEEQATEALVCKHATSIGGSIMRISFSQLQGI 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41345413 41350470 + Bda002994.2 Bda01g00863 863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00863 436 MobiDBLite consensus disorder prediction 188 211 - -
Bda01g00863 436 MobiDBLite consensus disorder prediction 188 206 - -
Bda01g00863 436 SMART rrm1_1 102 171 IPR000504 GO:0003723
Bda01g00863 436 SMART rrm1_1 250 319 IPR000504 GO:0003723
Bda01g00863 436 SMART rrm1_1 7 76 IPR000504 GO:0003723
Bda01g00863 436 SMART rrm1_1 360 429 IPR000504 GO:0003723
Bda01g00863 436 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 435 - -
Bda01g00863 436 SUPERFAMILY RNA-binding domain, RBD 96 198 IPR035979 GO:0003676
Bda01g00863 436 Gene3D - 100 202 IPR012677 -
Bda01g00863 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 334 - -
Bda01g00863 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Bda01g00863 436 CDD RRM4_PTBPH3 352 430 - -
Bda01g00863 436 SUPERFAMILY RNA-binding domain, RBD 247 430 IPR035979 GO:0003676
Bda01g00863 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 433 IPR000504 GO:0003723
Bda01g00863 436 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Bda01g00863 436 Pfam RRM-like domain 98 175 IPR021790 -
Bda01g00863 436 Gene3D - 1 99 IPR012677 -
Bda01g00863 436 Gene3D - 342 435 IPR012677 -
Bda01g00863 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 363 424 IPR000504 GO:0003723
Bda01g00863 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Bda01g00863 436 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 435 - -
Bda01g00863 436 Gene3D - 246 341 IPR012677 -
Bda01g00863 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 323 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00863 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - jre:108984238 786.563
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00863 Bda13g01425 CCT
Bda01g00863 Bda13g01425 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00863 Bda-Chr1:41345413 Bda05g00112 Bda-Chr5:5516670 6.46E-08 dispersed
Bda01g00863 Bda-Chr1:41345413 Bda13g01425 Bda-Chr13:36947009 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00863 Bda_Chr01 FPKM 3.773468 4.133886 4.031758 3.973337 5.152731 4.31788 4.118693 4.787799 4.375285