Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00865 AGACACAAGAAGCAGAAGGAGGAGGACGTTGTTATATGTGAATGCAAATACGATGTCAATGATCCTGGTGGTGCATGCGGAGAAAGATGCTTGAATTTCCTTACCAGCACTGAGTGTACGCCTGGCTATTGTCCTTGTGGTATTTATTGCAAGAATCAGAGATTTCAGAAATGCGAATATGCAAAAACTAGGTTGTTCAAAACAGAGGGCCGTGGATGGGGTCTTATAGCAGACGAAAACATAACGGCTGGCCAATTTATAATTGAATATTGTGGGGAAGTCATATCATGGAAGGAAGCCAAAAGAAGATCACAAGCTTATGAAAATCAAGGCCTAAAGGATGCTTTCATTATTTCTCTCAATGCATCCGAGTCCATTGATGCCACAAAAAAAGGAAGCTTTGCTAGGTTTATAAACCATTCATGTAACCCAAATTGTGAGACTAGGAAATGGAATGTATTAGGTGAAATAAGGGTTGGCATATTTGCAAAGGAAGACATGTCTATGGGAACTGAATTGGCATATGACTATAATTTTGAGTGGTACGGTGGTACTAAGGTCCGCTGCCTATGTGGTGCAACTAGTTGTTCAGGATTCCTTGGAGCAAAGTCTCGTGGCTTTCAGCCTTCCAACATGATCTGTCCGATTCATGCTTTTGTTTCGCCATTGGCATGTCATATTTTCTTTATATACATTTCAATTTGTCCTTTCATTATGCCTTTCGATTCTTTACTTTATAAATCGGGATTTACTTGCAGGTACTCGGTTGAAAAAATTCCACTTTATGATTCTGCTGAGGATGAGCCGAAGCTCCTTGTAAATTGCATAGCTTTTGAGTATAATGCTTATATGAATAACGAGAACCCCTTGATGGTAGATGATAGTATGCGAACCGATCACCAGTCCCATTCCACTATGGTTATTTGCCCATTTGGTTCTGCTTTGGAGGGTATAGGTACGAATGAAGTAAAAACTGAGGTAAACGAGGTGATGAAGCCGCACTCACAAGATACTCAACAGGCTTACCCACAGCAGAATGCAATGATCTCCCGAATACGAAGTAATACTGCATGCCGGAATTATCAAATTGGACCAAGGTCAGTTCCCAAAAAAAGGTCCAAACAGTTGTCTAATGGTAGATTGAAACAGTTGATACAAAAGCCGGTGGACGCCAAAGCGGCTGCTCTGCTATTAGCATCAAAGGCAGCGCAAGAAGAAATTTTAACTTACGAGGAAGTGAAAAATGAGGCCGCCTCTGAACTCGATGCGTTGTACGATGAAATACGACCTGCCATTGAGGAATATGAAAGGGATAGTCAAGACAGTGTGGCAACTAGTGTTGCGGAGAAGTGGATTCAAGCGAGCTGTTCGAAACTAAAGGCGGAATTTGATCTTTATGCAACAATTATTCGGAACATTGCCTGTACCCCACCAGCTTCCAGGACAAGTGGCTCTGCCAATGCCATTGAGGGAAGTAATAACAATGGAGTCAACTTGTTGACAAACTGA 1509 41.75 RHKKQKEEDVVICECKYDVNDPGGACGERCLNFLTSTECTPGYCPCGIYCKNQRFQKCEYAKTRLFKTEGRGWGLIADENITAGQFIIEYCGEVISWKEAKRRSQAYENQGLKDAFIISLNASESIDATKKGSFARFINHSCNPNCETRKWNVLGEIRVGIFAKEDMSMGTELAYDYNFEWYGGTKVRCLCGATSCSGFLGAKSRGFQPSNMICPIHAFVSPLACHIFFIYISICPFIMPFDSLLYKSGFTCRYSVEKIPLYDSAEDEPKLLVNCIAFEYNAYMNNENPLMVDDSMRTDHQSHSTMVICPFGSALEGIGTNEVKTEVNEVMKPHSQDTQQAYPQQNAMISRIRSNTACRNYQIGPRSVPKKRSKQLSNGRLKQLIQKPVDAKAAALLLASKAAQEEILTYEEVKNEAASELDALYDEIRPAIEEYERDSQDSVATSVAEKWIQASCSKLKAEFDLYATIIRNIACTPPASRTSGSANAIEGSNNNGVNLLTN 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41369489 41374017 + Bda002996.2 Bda01g00865 865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00865 502 Pfam SET domain 72 178 IPR001214 GO:0005515
Bda01g00865 502 SMART shorttest3 8 60 IPR006560 GO:0005634|GO:0018024
Bda01g00865 502 SMART set_7 61 184 IPR001214 GO:0005515
Bda01g00865 502 SMART PostSET_3 185 201 IPR003616 -
Bda01g00865 502 ProSiteProfiles SET domain profile. 61 178 IPR001214 GO:0005515
Bda01g00865 502 ProSiteProfiles AWS domain profile. 8 59 IPR006560 GO:0005634|GO:0018024
Bda01g00865 502 Pfam AWS domain 21 58 IPR006560 GO:0005634|GO:0018024
Bda01g00865 502 Gene3D SET domain 1 211 IPR046341 -
Bda01g00865 502 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 2 439 - -
Bda01g00865 502 PANTHER SET DOMAIN PROTEINS 2 439 - -
Bda01g00865 502 ProSiteProfiles Post-SET domain profile. 185 201 IPR003616 -
Bda01g00865 502 SUPERFAMILY SET domain 11 198 IPR046341 -
Bda01g00865 502 MobiDBLite consensus disorder prediction 482 502 - -
Bda01g00865 502 Coils Coil 400 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00865 - - - cmo:103485603 639.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00676 Bda-Chr1:33936651 Bda01g00865 Bda-Chr1:41369489 3.79E-49 dispersed
Bda01g00865 Bda-Chr1:41369489 Bda02g00314 Bda-Chr2:42903223 1.48E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1347 . . Bda01g00865 . . . . . . . . . . . . . Cpe13g00692 Bhi04g02533 . . . . . . . . . . . . . . . . . . . . . . Blo18g00148 . . Bpe02g01103 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00567 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15398 PF00856 SET 7.60E-19 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00865 Bda_Chr01 FPKM 1.87886 2.710788 3.036233 3.967729 2.74094 2.539205 3.10212 3.379823 2.950664