Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00868 ATGGCGACCAAAGAGAAGATCTACTTCGTAATGGAGTATGTTCGAGGTGGCGAGCTTTTCAACAAAGTGGCAAAAGGACGACTAAGAGAAGAACAAGCTCGCAAGTACTTCCAACAGCTAATATCCGCCGTCGGATTCTGTCATTCGCGAGGAGTCTACCATCGGGATCTTAAACCGGAGAATCTCCTTCTAGACGAAAACGGCGACCTAAAAGTCTCCGATTTCGGTCTTAGTGCCGTCTCCGATCAGATTCGGCAGGACGGTCTCTTCCACACATTTTGCGGTACACCGGCGTACGTTGCACCGGAAGTTTTGGCCAGAAATGGTTATGAAGCTTCAAAATTCGACATATGGTCTTGTGGAATTATTCTCTTCGTTTTAATGGCCGGATATTTGCCATTTAACGATCCAAATATCATGCAAATGTATAAAAAAATTTATCGGGGAGAATTCCGATCACCTAAATGGTTCTCGCCGGAGCTAACCCGGCTTCTGAAACGTCTCCTCGATGTAAATCCAGGAACCCGGATTACAATACCTGAGATTATGGAAAACAAATGGTTCAAAAAAGGGTTCAAGCAGGTAAAATTTTACATAGAAGACGACAAGCTCTGCAACATCGAAGATGCCGGCGAACGTTTTGATTCTTTGCCGGAAAGAGAGCCGAAGACAATGGAAAAGTGCAGGAAACGTTCGCCGTTAACTCGTCCGGCGAGCTTGAACGCGTTTGATATAATTTCATTCTCGCGAGGTTTCGATCTTTCTTCGCTCTTTGAGGATAACGGGGAGGAAGCGAGGGTGATTACCGGAACTCCGGTGAAGAAGATTATAGCGAAGTTGGAGGAGATAGCGAAGGTGGTGAGTTTTACAGTGAGGAAGAAGGATTGCAGAGTCAGAATGGAGGGGACGAGGGAAGGAGAGAGAGGTCCGTTGAGTATAGAGGCGGAGATATTTGAGTTGACGCCGTCGTTGATGGTTGTGGAGGTGAAGAAGAAAGGAGGAGATAAAATAGAGTATGAACAGTTTTGTAAAAGAGAATTGACGCCATTGTTGCGCAGCATGGAGCTCCATGAATCTCCATCTTCCTCCCATTTACCCTCTGATTCTGAATAA 1113 45.73 MATKEKIYFVMEYVRGGELFNKVAKGRLREEQARKYFQQLISAVGFCHSRGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARNGYEASKFDIWSCGIILFVLMAGYLPFNDPNIMQMYKKIYRGEFRSPKWFSPELTRLLKRLLDVNPGTRITIPEIMENKWFKKGFKQVKFYIEDDKLCNIEDAGERFDSLPEREPKTMEKCRKRSPLTRPASLNAFDIISFSRGFDLSSLFEDNGEEARVITGTPVKKIIAKLEEIAKVVSFTVRKKDCRVRMEGTREGERGPLSIEAEIFELTPSLMVVEVKKKGGDKIEYEQFCKRELTPLLRSMELHESPSSSHLPSDSE 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41457114 41458226 - Bda003000.1 Bda01g00868 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00868 370 Pfam Protein kinase domain 2 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00868 370 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 363 - -
Bda01g00868 370 ProSiteProfiles NAF domain profile. 235 259 IPR018451 GO:0007165
Bda01g00868 370 Gene3D Transferase(Phosphotransferase) domain 1 1 237 - -
Bda01g00868 370 CDD CIPK_C 241 352 - -
Bda01g00868 370 Pfam NAF domain 237 293 IPR004041 GO:0007165
Bda01g00868 370 SUPERFAMILY Protein kinase-like (PK-like) 4 196 IPR011009 -
Bda01g00868 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 52 64 IPR008271 GO:0004672|GO:0006468
Bda01g00868 370 Gene3D Kinase associated domain 1, KA1 238 354 - -
Bda01g00868 370 PANTHER - 1 363 - -
Bda01g00868 370 ProSiteProfiles Protein kinase domain profile. 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00868 370 SMART serkin_6 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00846 Bda-Chr1:40647996 Bda01g00868 Bda-Chr1:41457114 0 dispersed
Bda01g00868 Bda-Chr1:41457114 Bda02g00033 Bda-Chr2:1652112 0 dispersed
Bda01g00868 Bda-Chr1:41457114 Bda02g00137 Bda-Chr2:19715219 2.70E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69431 PF00069 Pkinase 1.40E-53 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00868 - - jre:109011279 565.844