Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00876 ATGGATATGGACACTAATTTCACTGTCGGCAAGCCGCCGGCGACGGCCGGTGTCATGGATTTGAAGCAGATGCCTGACACCCCGCATCGTGGATCTCACCACCGACGGGCACTGTCCGACACCTCTTTCCGATTACCGAATCTGGACGATCTTATCTTTGATCCCTCCGATCTTGACCTTTCTTATCTTCCATCGCCTTCACCGTCTCCTTCATCTGGCGCTTCCATCTCTAAGTTCGATGATTCCAGCGGCCCCAAGCTCTTGCCCTCTGGCTCCGGCGCCGTTGGTGCTCACTTTAGAAGCTTGTCAATGGACTCCGATTTCTTCGATTCCCTAGGACTTTCTGGCGATGGCGATAGGTTTGGCGGGAAATTGGTAGTGGGGGAGAAGAGGGTAGTTCGTCACCGGCACAGCAATTCGATGGATGGGTCATCATCATCGGCGTTTGAGGCTGATTGCATGGTGGTTGACGGCGTGAAGAAGGCGATGGGGGCAGACAAACTCGCTGAGCTTTCCCTAATTGACCCCAAAAGAGCTAAGAGGATTCTTGCAAATCGACAATCTGCTGCCCGATCGAAGGAAAGAAAAGTTCGTTATACCGGCGAGTTGGAGAGGAAGGTTCAAACACTGCAGTCAGAAGCAACAACGCTTTCTGCGCAAGTCACAATTTTGCAGAGAGATACCACCGGGTTGTCTACAGAGAACAAGGAACTGAAACTGCGATTACAAGCTTTGGAGCAGCAAGCCCAACTTAGGGACGCTTTGAACGAAGCATTGAAAGAAGAAGTGCAGCGGCTTAAGATAGCTGCAGGGCAAATGCTGGCTGGAAATGGCAACTCGTATAGCCGAGGACTGCCTCCGCAATTCCCATCTCCACCGCCATCTCTGCATCAATTTGGCACTTCAAAGCCTCAAATTCACATGCCTCACACCTCGGCAAACCAACAGCATCGCGATCTTGGCCTCAATGGCCTTCAGTCTCATCCGGGGTTCATGGACTTCAATCCTAAAGCCGGCTGA 1020 51.96 MDMDTNFTVGKPPATAGVMDLKQMPDTPHRGSHHRRALSDTSFRLPNLDDLIFDPSDLDLSYLPSPSPSPSSGASISKFDDSSGPKLLPSGSGAVGAHFRSLSMDSDFFDSLGLSGDGDRFGGKLVVGEKRVVRHRHSNSMDGSSSSAFEADCMVVDGVKKAMGADKLAELSLIDPKRAKRILANRQSAARSKERKVRYTGELERKVQTLQSEATTLSAQVTILQRDTTGLSTENKELKLRLQALEQQAQLRDALNEALKEEVQRLKIAAGQMLAGNGNSYSRGLPPQFPSPPPSLHQFGTSKPQIHMPHTSANQQHRDLGLNGLQSHPGFMDFNPKAG 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41664779 41666444 + Bda003013.1 Bda01g00876 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00876 339 MobiDBLite consensus disorder prediction 295 322 - -
Bda01g00876 339 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 238 IPR004827 GO:0003700|GO:0006355
Bda01g00876 339 MobiDBLite consensus disorder prediction 295 339 - -
Bda01g00876 339 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 13 319 - -
Bda01g00876 339 MobiDBLite consensus disorder prediction 63 79 - -
Bda01g00876 339 Pfam bZIP transcription factor 177 234 IPR004827 GO:0003700|GO:0006355
Bda01g00876 339 Gene3D - 176 229 - -
Bda01g00876 339 MobiDBLite consensus disorder prediction 63 87 - -
Bda01g00876 339 Coils Coil 200 220 - -
Bda01g00876 339 SUPERFAMILY Leucine zipper domain 177 229 IPR046347 GO:0003700|GO:0006355
Bda01g00876 339 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 13 319 - -
Bda01g00876 339 Coils Coil 228 265 - -
Bda01g00876 339 CDD bZIP_plant_RF2 178 227 IPR044759 GO:0003700|GO:0006355
Bda01g00876 339 MobiDBLite consensus disorder prediction 1 39 - -
Bda01g00876 339 SMART brlzneu 173 237 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00876 Bda-Chr1:41664779 Bda09g01565 Bda-Chr9:47199338 6.88E-64 dispersed
Bda01g00876 Bda-Chr1:41664779 Bda13g01410 Bda-Chr13:36813495 8.00E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15399 PF00170 bZIP_1 4.20E-08 CL0018 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00876 K20557 - jre:109011427 327.02