Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00877 ATGGCTTTTCAAATGGATTTCTGCAACTATGGAGGAGCTCAGTCAAACCCTTTTGGGTGTGAGCTAATGGAAGCACTTGAACCTTTTATGAAGAGTGCTTCTTCTTCAACCTCTGAAACTTCTTCTCTCTCCTATTTTCCCCCCACCCAAACATACCCGGACGTGTCGTCTTCTTCCTTCGCTCAATCATTCACAGAGCCCTACTTAACCCATAACCAATATCAAAACAACCTTTGTTTTGAGCACCCATATTCGAACCAGTTCAACTACCATGCCCATTCTCAAACCCACCAGGATCAAAACCAAACCCAGAAACCTTGGGGGACTGTCGATTATAACCAGCCAGACACAACTCAGACCACGTCTCTCGGTCCCAAGCCGACCAAGCTTTACAGAGGAGTGAGACAGAGGCATTGGGGAAAATGGGTCGCCGAGATTCGTCTGCCAAAGAATCGGACTCGGCTGTGGCTCGGCACCTTCGACACAGCGGACGAAGCTGCAATGGCGTATGATCGGGCAGCTTATAAGCTTAGAGGTGACTCCGCTAAGCTCAATTTCCCTCACCTTAAACACCATAGCTCGACTATAGAGTTCGGCGACCTTAGCAGTCTCCATTCTTCGGTAGATGCGAAGCTCCAAGCAATTTATCAGAGCTTGGCCGATTCGCAAAAACTGGGGAAGAAGGAGAAAGCCGTTGCCTCGAGAGGAAAAGCCAGGCCCCAGCCGGCGATAACTGGCACAGAGGGTACAAAAATGACGGAAATGGAATCAAATGCTTATGAGCATTACTCCATGGATAATGCTTCAGGAATGTTTGAAACTACAGTATTTTCAGATCTTACGTTCTCGGGTCTTGCAAACTCACCATGGGATCCGTCTTCAGAGAATTTCACGATGGAGAACTACCCATCAGAGATTAACTGGGATTCCATCTTCCCTTGA 942 47.77 MAFQMDFCNYGGAQSNPFGCELMEALEPFMKSASSSTSETSSLSYFPPTQTYPDVSSSSFAQSFTEPYLTHNQYQNNLCFEHPYSNQFNYHAHSQTHQDQNQTQKPWGTVDYNQPDTTQTTSLGPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTADEAAMAYDRAAYKLRGDSAKLNFPHLKHHSSTIEFGDLSSLHSSVDAKLQAIYQSLADSQKLGKKEKAVASRGKARPQPAITGTEGTKMTEMESNAYEHYSMDNASGMFETTVFSDLTFSGLANSPWDPSSENFTMENYPSEINWDSIFP 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41669531 41670472 + Bda003014.1 Bda01g00877 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00877 313 MobiDBLite consensus disorder prediction 93 128 - -
Bda01g00877 313 Gene3D AP2/ERF domain 130 188 IPR036955 GO:0003700|GO:0006355
Bda01g00877 313 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Bda01g00877 313 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Bda01g00877 313 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Bda01g00877 313 MobiDBLite consensus disorder prediction 230 249 - -
Bda01g00877 313 CDD AP2 129 189 IPR001471 GO:0003700|GO:0006355
Bda01g00877 313 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Bda01g00877 313 MobiDBLite consensus disorder prediction 93 126 - -
Bda01g00877 313 Pfam AP2 domain 131 179 IPR001471 GO:0003700|GO:0006355
Bda01g00877 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 311 - -
Bda01g00877 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 311 - -
Bda01g00877 313 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00877 Bda03g00498 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00877 Bda-Chr1:41669531 Bda10g00094 Bda-Chr10:2231249 9.11E-51 dispersed
Bda13g01247 Bda-Chr13:34905529 Bda01g00877 Bda-Chr1:41669531 4.17E-25 dispersed
Bda14g00240 Bda-Chr14:1634605 Bda01g00877 Bda-Chr1:41669531 3.40E-22 transposed
Bda01g00877 Bda-Chr1:41669531 Bda03g00498 Bda-Chr3:4235216 4.79E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15400 PF00847 AP2 2.50E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00877 K09286 - twl:120009478 234.958