Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00899 ATGCATGCGGACTTGGATGAAGAGATCACAGGGCTTTATAGCCAAGTTAGAAGATTGAGAAACGTTGCAGAAGAGATTGGGACAGAAGCGAAATTCCAGAATGATTTTCTCAATCAGTTGCTAGCCAAAAAGTATCATCCAGATGCAAATAAGAATAATCCTTCAGCAAAGAAAAAATTTCAGGAGATTAGAGAAGCATATGAGACTTTACATGATTCTAAAAAGAGGTTGCAGTACAACATGAGGCGTAATAGAAGTTCTCAGAATGTGGAATTCGGTGCTGGTGATGCGGAGGGCTTTAGACATAGTCATCGAACTCATTTTTCTGATTCATTTCATAAAATATTTTCAGAGATCTTCGAACATGAGACAAACAATTTTGCTTCAGATATTCAGGCAGAGCTATTGCTCTCTTTCACTGAAGCTGCAAAAGGATGCATAAAGGATTTGTCAGTCAACGCATTCATTCCTTGCAATGCTTGCTATGGAATTGGCTATCCCAATGATGCCCAGAAAGAAGTTTGTCCAATTTGTAGAGGTGTGGGGAGAGTTACTATTCCTCCATTTACATCCATATGCAACTCTTGTAAAGGATTGGGCCAAGCTATTCTGGGTGGCAAGATTGAGGTGCCAACTTTATTAGGCAAGACTCAAATTAATATACCAAAAGGGGCTCAGGATGGACAACTTATGATCATCAGAGGCAAAGGACTGCCCAAATATGGTTTTCTTATTGACCATGGTGATCAATACGTTAGATTTCGTGTGAAATTCCCTGCTGAGGTAAATGAGCGACAGCGTGCTATTTTGGAAGAGTTTGCACTGGAGGAAATGAATAATGGAAATGCAAATGCTGATGGAGGAAATTGGTGA 873 39.86 MHADLDEEITGLYSQVRRLRNVAEEIGTEAKFQNDFLNQLLAKKYHPDANKNNPSAKKKFQEIREAYETLHDSKKRLQYNMRRNRSSQNVEFGAGDAEGFRHSHRTHFSDSFHKIFSEIFEHETNNFASDIQAELLLSFTEAAKGCIKDLSVNAFIPCNACYGIGYPNDAQKEVCPICRGVGRVTIPPFTSICNSCKGLGQAILGGKIEVPTLLGKTQINIPKGAQDGQLMIIRGKGLPKYGFLIDHGDQYVRFRVKFPAEVNERQRAILEEFALEEMNNGNANADGGNW 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41970649 41980935 - Bda003038.1 Bda01g00899 899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00899 290 Pfam DnaJ C terminal domain 199 259 IPR002939 -
Bda01g00899 290 Gene3D DnaJ domain 13 130 IPR036869 -
Bda01g00899 290 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 203 IPR036410 -
Bda01g00899 290 CDD DnaJ 41 72 IPR001623 -
Bda01g00899 290 Gene3D - 156 202 - -
Bda01g00899 290 SMART dnaj_3 35 75 IPR001623 -
Bda01g00899 290 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 39 203 - -
Bda01g00899 290 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Bda01g00899 290 CDD SNARE_Qc 2 40 - -
Bda01g00899 290 Pfam DnaJ domain 41 80 IPR001623 -
Bda01g00899 290 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 201 289 - -
Bda01g00899 290 SUPERFAMILY HSP40/DnaJ peptide-binding domain 199 270 IPR008971 GO:0006457|GO:0051082
Bda01g00899 290 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 201 289 - -
Bda01g00899 290 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 39 203 - -
Bda01g00899 290 Gene3D - 203 287 - -
Bda01g00899 290 SUPERFAMILY Chaperone J-domain 41 105 IPR036869 -
Bda01g00899 290 SUPERFAMILY SNARE fusion complex 1 40 - -
Bda01g00899 290 ProSiteProfiles dnaJ domain profile. 15 83 IPR001623 -
Bda01g00899 290 PRINTS DnaJ domain signature 55 75 IPR001623 -
Bda01g00899 290 PRINTS DnaJ domain signature 38 53 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00899 - - - pvy:116141294 257.684
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00899 Bda-Chr1:41970649 Bda04g00747 Bda-Chr4:56662376 7.22E-13 dispersed
Bda01g00899 Bda-Chr1:41970649 Bda13g01376 Bda-Chr13:36374069 3.58E-21 wgd
Bda01g00899 Bda-Chr1:41970649 Bda03g00475 Bda-Chr3:4098831 5.10E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00899 Bda_Chr01 FPKM 0.22 0.089327 0.0 0.0 0.074234 0.066711 0.070299 0.0 0.0