Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00901 ATGGGTTACTTCTCTTGCAGTGCAGAGTCCGCCATAGCCACCTGTGATCCTCGTTACTGGGATCTTATAAACAATGCTAAAACAGGAAGACCAAAACCTTATAAACCTTTGAAGATCAGAGAATTTTCCTATTCCGACCTCGTCTCGGCCACTGATGGATTTTCTGCGGAGAATTTCTTGGGAAAAGGTAGCCATGGAAGTGTCTACAAAGCAACTTTGGACGACGGAAAGCTCATTGCCGCCGTCAAAAAGACTAAAATCTCAATTCAACCAATGAGTTACTGCAAGTGCACTACCAGTCCGGTGGAGAATGAAATTGAGATTCTCTCTCGAATCCAAAACCAGAGGCTCGTGAATCTAATCGGGTTCTGTTCGAAAAAGGAGGACAAGGTGATCGTGGTTGAGTTCATGCCTAATGGCTCGCTCTACGATCTGCTTCACTCGAGCTTCAGGCCGCCTGGTTGGCGCCGCCGGTTGCGTTTCGCTTTACAAATCGCTATGGCCGTTCAAGCATTGCACTTATCGTCTCCGCCGGTTATCCATAGAGACATTAAATCGTCAAACGTTTTGATCGACGGAGACTTTAACGCTCGCCTCGGAGATTTTGGGCTTGCTCTGAGAGGTCATGTGGAGGACGTTAAAGTGAAGAGTACACCTCCTGCCGGGACTTTGGGTTACCTCGATCCTGGCTACCTTTCTCCGGGAGATCTGAGCGCTAAAAGCGACGTATTCAGCTTCGGAATCTTGTTATTGGAGATCATTAGTGGCCGGAACCCTATCGACCTCAATTATAGCCCAACGTCCGTTGTTGACTGGGCGATCCCGATGATTAAACACGGGAATTTTGCTGGAATTTGTGATCGCCGAGTCCAATTACCCGGGTCCATGGCCTTGATCAGAAATGTAGCGACGCTAGCCTCAATGTGCGTCAGATCGAAGGCAGAGAAGCGACCGGCGATGTCGGAGGTGGTGGAGTGGCTTGAGATGGCTAGAAAGAAGGTACGCGAACAGAGGATCTGGAACAAAATTCGGCGACGGGCAGATAAATCACCGCCATTATTTAAGCGGGAAGCTACGGAGGACACTAAAATGCCCGGGAGTGAGAAGGTGGCGACAATCGTGAAGCTTGGAAGTAGAAGGAACAGGAAGGTGTCAAGTGTTGGGGGAGCAGAGAGGAGTGGACGGGAAGGCGATCGGTTGGTCAGATCACGATCAGTGGGCTCTGCAACCGCCATCAAAAAGGATTCCGCATGGAATCTCGGAAGGAGAGAGCAAGGAATTGCAGTGAAAGTCGGAGCGGTGAAATTGATGAAGTCGAAGTCCATGGGCGTTTCGGAGAGTAGCAGTAGAATTGTGCAGTTCGGCCATGAAAGAAAAGCTCGAGAGAGAAAGACGTACGAGAAATCAGAGAGGAAATTTCTCGAGGAGCCATTGATTTCTTCTCATCAGCATTAA 1455 49.21 MGYFSCSAESAIATCDPRYWDLINNAKTGRPKPYKPLKIREFSYSDLVSATDGFSAENFLGKGSHGSVYKATLDDGKLIAAVKKTKISIQPMSYCKCTTSPVENEIEILSRIQNQRLVNLIGFCSKKEDKVIVVEFMPNGSLYDLLHSSFRPPGWRRRLRFALQIAMAVQALHLSSPPVIHRDIKSSNVLIDGDFNARLGDFGLALRGHVEDVKVKSTPPAGTLGYLDPGYLSPGDLSAKSDVFSFGILLLEIISGRNPIDLNYSPTSVVDWAIPMIKHGNFAGICDRRVQLPGSMALIRNVATLASMCVRSKAEKRPAMSEVVEWLEMARKKVREQRIWNKIRRRADKSPPLFKREATEDTKMPGSEKVATIVKLGSRRNRKVSSVGGAERSGREGDRLVRSRSVGSATAIKKDSAWNLGRREQGIAVKVGAVKLMKSKSMGVSESSSRIVQFGHERKARERKTYEKSERKFLEEPLISSHQH 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41996970 41998424 + Bda003041.1 Bda01g00901 901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00901 484 MobiDBLite consensus disorder prediction 439 468 - -
Bda01g00901 484 MobiDBLite consensus disorder prediction 452 468 - -
Bda01g00901 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Bda01g00901 484 ProSitePatterns Protein kinases ATP-binding region signature. 60 84 IPR017441 GO:0005524
Bda01g00901 484 SUPERFAMILY Protein kinase-like (PK-like) 30 329 IPR011009 -
Bda01g00901 484 Gene3D Transferase(Phosphotransferase) domain 1 137 349 - -
Bda01g00901 484 Pfam Protein tyrosine and serine/threonine kinase 57 326 IPR001245 GO:0004672|GO:0006468
Bda01g00901 484 Gene3D Phosphorylase Kinase; domain 1 24 136 - -
Bda01g00901 484 PANTHER OS01G0750732 PROTEIN 1 473 - -
Bda01g00901 484 PANTHER - 1 473 - -
Bda01g00901 484 MobiDBLite consensus disorder prediction 381 402 - -
Bda01g00901 484 ProSiteProfiles Protein kinase domain profile. 54 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00901 484 SMART serkin_6 54 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00901 - - - jre:109001150 531.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00901 Bda11g00788 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00901 Bda-Chr1:41996970 Bda13g00288 Bda-Chr13:3617508 1.40E-67 dispersed
Bda01g00901 Bda-Chr1:41996970 Bda11g00788 Bda-Chr11:7865024 9.10E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g480 . . Bda01g00901 . . . . . . . . . . . . . . Bhi04g00811 . . . . . Lcy13g1503 Cla08g01146 . . . . . . . . Cone17ag1191 . . . . Cme03g01826 . . Bda11g00788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01004 Csa02g02188 Chy03g01329 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012718 2 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 1 0 0 0 0 1 1 1 0 1 16
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69433 PF07714 PK_Tyr_Ser-Thr 2.00E-41 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00901 Bda_Chr01 FPKM 306.780151 324.883362 274.81427 271.14209 360.704468 391.749786 374.039581 296.16214 304.777557