Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00905 CGGCAGCGACATTTCCCCGTCGTTGCGAATGCTATTTCCTCCATGCATTGTCATTTCACGGCGCCGTCTATGACGATTTCGTCCCAATTGCCAACTCTACGGCCTCGTATCTACGCCACCCATGACCCAAAGTTCCGGTCCTTTTTCTCAATGTCTTTCTCTGATTCTCTGATTGACAGGCGACGTTTTCCGAGCTTATCCTCGCCGCCTTCTACTGCAAATTCTGAAATCGCGCACAGAAATGGCCATGTTCGGCCTAACTCCTCGAAGCTCTCCAATTTCAGAGTCCGAGCCTCAAACGGCGACTTTGGAGTCCCTTCTAGCGCCAAGCTCGCCGTATTCAGCGCTGCGATTGCTGCAACGCTCGCTGTCGCCAATCGCGTCCTCTACAAGCTCGCTCTCGTTCCAATGCAGGAATACCCCTTCTTTTTAGCTCAGTATGTAGTTATATACTTCACTATATTATTTTTAAGGTACAAGGTAGGTATTGTGACAGATGACATGTTAGCGCTTCCCAAATCTCGGTTCATAGCCATAGGCGTTCTAGAGGCGCTTGGAGTTGTGCTCGGAATGACCTCAGGAGCCACTCTTCCTGGACCGGCCATACCAATACTGAGTCAGACTTTTTTGGTGTGGCAGCTGGTCTTTTCTGCCATTCTTTTACGAAGAAGATATTCATTCAACCAGATTGCCGGTTGCTTGGTTGTGACTGCTGGTGTAGTGGTGGCAGTTGCAGGTGGGACCAAGTCCAATGCTGGTCAGATGCTATCTGAAGTTGAAATTTTATGGCCAGCATTGATGATAGCTTCTAGTGCTTTCCAAGCTGGTGCATCCATTGTCAAGGAATTTATTTTCATTGATGCAGCAAATCGCTTGAAGGGAAAGTCACTTGACATATTTGTGGTCAATTCTATGGGATCTGGATTTCAGGCTCTTTTTGTTTTACTCTTTCTACCTTTCCTTTCAAACTTGAAAGGCATACCTTTCACAGAACTTCCCTCTTATTTGAAGAGTGTTTATTTTTATCATAAATCTTCATCTGCATTTGATCCAGGTTGCGGTGGAGCTCCATTGCTTCCTCTGCTTTACATAAGCACAAATCTAGCTTTTAATATTTTCCTGCTCAACGTAGTCAAACTTTCTTCTGCACTTGTTGCCTCCCTTGCTGTGATGCTCTCAGTGCCAATTTCAATTTATATTCTTTCCCTTCCACTGCCATATCTTCCCGACGCCACTAGCTTGAGTCCCACTTTTATCAGTGGGAGTGCAATTCTGATTTTGGGTCTGATTCTTTACTACATTCCCCAGTCTGCCAAACACAGCTCCTGA 1329 45.82 RQRHFPVVANAISSMHCHFTAPSMTISSQLPTLRPRIYATHDPKFRSFFSMSFSDSLIDRRRFPSLSSPPSTANSEIAHRNGHVRPNSSKLSNFRVRASNGDFGVPSSAKLAVFSAAIAATLAVANRVLYKLALVPMQEYPFFLAQYVVIYFTILFLRYKVGIVTDDMLALPKSRFIAIGVLEALGVVLGMTSGATLPGPAIPILSQTFLVWQLVFSAILLRRRYSFNQIAGCLVVTAGVVVAVAGGTKSNAGQMLSEVEILWPALMIASSAFQAGASIVKEFIFIDAANRLKGKSLDIFVVNSMGSGFQALFVLLFLPFLSNLKGIPFTELPSYLKSVYFYHKSSSAFDPGCGGAPLLPLLYISTNLAFNIFLLNVVKLSSALVASLAVMLSVPISIYILSLPLPYLPDATSLSPTFISGSAILILGLILYYIPQSAKHSS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42045431 42049901 + Bda003046.1 Bda01g00905 905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00905 442 MobiDBLite consensus disorder prediction 65 89 - -
Bda01g00905 442 SUPERFAMILY Multidrug resistance efflux transporter EmrE 171 248 - -
Bda01g00905 442 PANTHER PROTEIN CLT2, CHLOROPLASTIC 74 439 - -
Bda01g00905 442 Pfam CRT-like, chloroquine-resistance transporter-like 120 432 IPR013936 -
Bda01g00905 442 PANTHER PROTEIN CLT2, CHLOROPLASTIC 74 439 IPR013936 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00905 - - - nnu:104595526 444.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00905 Bda-Chr1:42045431 Bda02g00616 Bda-Chr2:47093232 1.20E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g535 . . Bda01g00905 . . . . . . Cmo12g00163 . . . Car12g00190 Sed03g1389 . Cpe07g00178 Bhi04g01399 Tan02g2457 Cmetu03g1095 . Hepe10g0441 . Lcy13g1491 . . . . . . . . . . . . . . . . . . . Bpe02g01144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011222 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 2 0 1 1 2 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00905 Bda_Chr01 FPKM 6.33622 6.871982 7.608256 8.425156 11.986546 11.751161 12.575101 12.006632 11.745452