Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00910 AAGCAGAATCCATGGACTCTTCAACTTTTGAGAAGAGTACCTGTCCCAGTAGTTCCTGTCTCTTCCAAATGCAAAATTTTATTTTGCCAATCTTTTATGGTACCGGGAGGAGGAAGTGGGACTTCCATTCTAAACTCTGCTACCCTGATATTGACTAGAACATATGATGCTTTATGCGGGAGCCTCCTTATTATTAAATTGTTTCCAGCAATTGGTTTCATTGCTTTTGCTGTTTGGGGTGTTCAGCCTCTCATCCGCTTGAGCAGGAATTTATTTCTTCATACAACAGATGATAGTTGGAATAAAAGTAATGTTTACTATGTTACCACTCATTACATTCGTCCGCTGCTGCTCTGGTTTGGTGCTACATTAATCTGCAGGGCATTAGACCCATTAGTCCTACCTTCAGACGTCAGCCAGGCTATTAAACAACGACTTCTTAATTTTGTGCAATCATTGTCAACAATGCTTGCGTTTGCCTATTGTCTATCGAGCTTGATTCAACAGGCACAGAAGTTCTTCATTGCAACAACTGATTCTGGTGAAGCAAGAAATATGGGTTTCGATTTTGCTGGGAAAACTGTTTATACAGCAGTATGGGTTGCTGCTTTATCACTGTTCATGGAGTTGCTAGGTTTTTCTACCCAAAAGTGGCTGACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCGGGTCGTGAGATTTTGACAAATTTCCTTTCAAGCATAATGATTCATGCCACGAGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATTGACGGCTACGAAGTTTCTGGCACTGTAGAGCATGTGGGTTGGTGGTCTCCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATCCCAAATCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCCCATCTTGCCATCAGCCATTTCGACACCAATAAAATCAATAATGTTGTAGCTGACATGCGCAAAGTTTTAGCGAAAAATCCTCAAATTGAGCAGCAAATGTTACACAAAAGAGTTTTTCTGGATTATATTGATCCCGAAAATCAAGCTCTTATGGTTCTAGTTTCGTGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTATGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCCGAGTCATCAGCCATCACCGCGCCAGGCTTGCTACTCCCATTCGCACAGTTCAAAAAAGTTACAGAGAGGCTGACTTGGATGTATATTTCGCTGATACCATCATCTCGCAATCTACGGCAGCCAATGATTGTCCTCTCCTGCTCATTGAACCGTCACATAAGATGAGCAGTGATGACAAAGTAAAGGCCTTCACTCGATCCACGAGTTCAGACGAAGAAAAAGAAGCCCAGCAAGAAGCAGCATCCACAACTGATATGAATGCCTCTCACAAAGCTGGATCGTCATCAAATCATGAAGCCGAAAAAGACGATAAAAGTGCAGAAAAGCCATCGGAGACTCAAACCCAGAACCCACGACCTGAAACTTCAGAGAGAATTCCTGAAATGCCAGTGGCGAAGAACGGCGCGAGAGAAAAAGAGGATGAGAGTATGGTGATCAAGTCCATCAACACTACCCTTAAAGGAGTGACATCGGAGAAGTCCTGGGCTGTTTTGCCGGCATCAGACAGTGAAGAAATGGCATCTGTTACTGTGCGTATGAAGGATGTATCGACTGCAATATCGTTGCCTCAATTGGAAGAGAACATACTTCTAGGTCTTGCTTTGGAAGGGTCGAAAAGAACACTTCCAATCGAGGAAGAAACTCCTTCAATGTTTGAATCAAGAGAAATATCTGCCCATCGAACTCCACTTTTCCAAATTAGCACGGAAGCTAAAGATGCTCAGGTACCAGCAGTTCCCGGTGCGACCCAAAATGCTTAA 1941 42.97 KQNPWTLQLLRRVPVPVVPVSSKCKILFCQSFMVPGGGSGTSILNSATLILTRTYDALCGSLLIIKLFPAIGFIAFAVWGVQPLIRLSRNLFLHTTDDSWNKSNVYYVTTHYIRPLLLWFGATLICRALDPLVLPSDVSQAIKQRLLNFVQSLSTMLAFAYCLSSLIQQAQKFFIATTDSGEARNMGFDFAGKTVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSHLAISHFDTNKINNVVADMRKVLAKNPQIEQQMLHKRVFLDYIDPENQALMVLVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKSYREADLDVYFADTIISQSTAANDCPLLLIEPSHKMSSDDKVKAFTRSTSSDEEKEAQQEAASTTDMNASHKAGSSSNHEAEKDDKSAEKPSETQTQNPRPETSERIPEMPVAKNGAREKEDESMVIKSINTTLKGVTSEKSWAVLPASDSEEMASVTVRMKDVSTAISLPQLEENILLGLALEGSKRTLPIEEETPSMFESREISAHRTPLFQISTEAKDAQVPAVPGATQNA 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42107916 42119092 + Bda003051.1 Bda01g00910 910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00910 646 Pfam Mechanosensitive ion channel 193 400 IPR006685 GO:0016020|GO:0055085
Bda01g00910 646 MobiDBLite consensus disorder prediction 473 487 - -
Bda01g00910 646 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 2 636 IPR045042 -
Bda01g00910 646 MobiDBLite consensus disorder prediction 488 503 - -
Bda01g00910 646 SUPERFAMILY Sm-like ribonucleoproteins 236 306 IPR010920 -
Bda01g00910 646 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 2 636 - -
Bda01g00910 646 MobiDBLite consensus disorder prediction 451 536 - -
Bda01g00910 646 MobiDBLite consensus disorder prediction 451 472 - -
Bda01g00910 646 Gene3D - 252 307 IPR023408 -
Bda01g00910 646 Gene3D - 149 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00910 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - rcu:8268416 780.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00910 Bda-Chr1:42107916 Bda04g00117 Bda-Chr4:2654404 0 dispersed
Bda01g00910 Bda-Chr1:42107916 Bda13g01360 Bda-Chr13:36001522 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g514 . . Bda01g00910 . . . . . . . . . . Car12g00181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00115 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00254 . 1 535 Mechanosensitive Ion Channel Family AT4G00290 54.9 1.0e-149 526.9
Bda04g00117 . 1 605 Mechanosensitive Ion Channel Family AT5G10490 63.3 7.8e-201 697.2
Bda01g00910 . 16 621 Mechanosensitive Ion Channel Family AT5G10490 54.2 1.3e-174 610.1
Bda13g01360 . 247 763 Mechanosensitive Ion Channel Family AT5G10490 61.4 1.1e-167 587.0
Bda01g00910 . 1 617 Mechanosensitive Ion Channel Family AT1G58200 55.3 6.3e-182 634.4
Bda04g00117 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 59.0 4.4e-175 611.7
Bda13g01360 . 247 746 Mechanosensitive Ion Channel Family AT1G58200 59.9 4.5e-156 548.5
Bda06g00468 . 63 923 Mechanosensitive Ion Channel Family AT1G53470 54.9 1.7e-248 855.9
Bda14g00631 . 1 821 Mechanosensitive Ion Channel Family AT1G53470 55.4 8.3e-243 837.0
Bda06g00468 . 63 925 Mechanosensitive Ion Channel Family AT3G14810 53.2 1.9e-236 815.8
Bda14g00631 . 2 827 Mechanosensitive Ion Channel Family AT3G14810 52.7 3.0e-226 781.9
Bda06g00468 . 63 924 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.2e-280 961.8
Bda14g00631 . 10 826 Mechanosensitive Ion Channel Family AT1G78610 57.5 5.6e-260 894.0
Bda06g00468 . 221 920 Mechanosensitive Ion Channel Family AT2G17000 58.9 5.7e-225 777.7
Bda14g00631 . 142 820 Mechanosensitive Ion Channel Family AT2G17000 58.5 8.2e-224 773.9
Bda14g00631 . 116 566 Mechanosensitive Ion Channel Family AT2G17010 60.8 1.0e-144 510.8
Bda03g00130 . 55 776 Mechanosensitive Ion Channel Family AT5G19520 51.4 2.3e-193 672.5
Bda03g00130 . 61 776 Mechanosensitive Ion Channel Family AT5G12080 56.0 1.0e-214 743.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00910 Bda_Chr01 FPKM 5.056958 6.042619 9.826879 9.609755 8.377348 9.946172 8.133423 7.388577 8.031515