Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00910 AAGCAGAATCCATGGACTCTTCAACTTTTGAGAAGAGTACCTGTCCCAGTAGTTCCTGTCTCTTCCAAATGCAAAATTTTATTTTGCCAATCTTTTATGGTACCGGGAGGAGGAAGTGGGACTTCCATTCTAAACTCTGCTACCCTGATATTGACTAGAACATATGATGCTTTATGCGGGAGCCTCCTTATTATTAAATTGTTTCCAGCAATTGGTTTCATTGCTTTTGCTGTTTGGGGTGTTCAGCCTCTCATCCGCTTGAGCAGGAATTTATTTCTTCATACAACAGATGATAGTTGGAATAAAAGTAATGTTTACTATGTTACCACTCATTACATTCGTCCGCTGCTGCTCTGGTTTGGTGCTACATTAATCTGCAGGGCATTAGACCCATTAGTCCTACCTTCAGACGTCAGCCAGGCTATTAAACAACGACTTCTTAATTTTGTGCAATCATTGTCAACAATGCTTGCGTTTGCCTATTGTCTATCGAGCTTGATTCAACAGGCACAGAAGTTCTTCATTGCAACAACTGATTCTGGTGAAGCAAGAAATATGGGTTTCGATTTTGCTGGGAAAACTGTTTATACAGCAGTATGGGTTGCTGCTTTATCACTGTTCATGGAGTTGCTAGGTTTTTCTACCCAAAAGTGGCTGACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCGGGTCGTGAGATTTTGACAAATTTCCTTTCAAGCATAATGATTCATGCCACGAGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATTGACGGCTACGAAGTTTCTGGCACTGTAGAGCATGTGGGTTGGTGGTCTCCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATCCCAAATCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCCCATCTTGCCATCAGCCATTTCGACACCAATAAAATCAATAATGTTGTAGCTGACATGCGCAAAGTTTTAGCGAAAAATCCTCAAATTGAGCAGCAAATGTTACACAAAAGAGTTTTTCTGGATTATATTGATCCCGAAAATCAAGCTCTTATGGTTCTAGTTTCGTGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTATGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCCGAGTCATCAGCCATCACCGCGCCAGGCTTGCTACTCCCATTCGCACAGTTCAAAAAAGTTACAGAGAGGCTGACTTGGATGTATATTTCGCTGATACCATCATCTCGCAATCTACGGCAGCCAATGATTGTCCTCTCCTGCTCATTGAACCGTCACATAAGATGAGCAGTGATGACAAAGTAAAGGCCTTCACTCGATCCACGAGTTCAGACGAAGAAAAAGAAGCCCAGCAAGAAGCAGCATCCACAACTGATATGAATGCCTCTCACAAAGCTGGATCGTCATCAAATCATGAAGCCGAAAAAGACGATAAAAGTGCAGAAAAGCCATCGGAGACTCAAACCCAGAACCCACGACCTGAAACTTCAGAGAGAATTCCTGAAATGCCAGTGGCGAAGAACGGCGCGAGAGAAAAAGAGGATGAGAGTATGGTGATCAAGTCCATCAACACTACCCTTAAAGGAGTGACATCGGAGAAGTCCTGGGCTGTTTTGCCGGCATCAGACAGTGAAGAAATGGCATCTGTTACTGTGCGTATGAAGGATGTATCGACTGCAATATCGTTGCCTCAATTGGAAGAGAACATACTTCTAGGTCTTGCTTTGGAAGGGTCGAAAAGAACACTTCCAATCGAGGAAGAAACTCCTTCAATGTTTGAATCAAGAGAAATATCTGCCCATCGAACTCCACTTTTCCAAATTAGCACGGAAGCTAAAGATGCTCAGGTACCAGCAGTTCCCGGTGCGACCCAAAATGCTTAA 1941 42.97 KQNPWTLQLLRRVPVPVVPVSSKCKILFCQSFMVPGGGSGTSILNSATLILTRTYDALCGSLLIIKLFPAIGFIAFAVWGVQPLIRLSRNLFLHTTDDSWNKSNVYYVTTHYIRPLLLWFGATLICRALDPLVLPSDVSQAIKQRLLNFVQSLSTMLAFAYCLSSLIQQAQKFFIATTDSGEARNMGFDFAGKTVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSHLAISHFDTNKINNVVADMRKVLAKNPQIEQQMLHKRVFLDYIDPENQALMVLVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKSYREADLDVYFADTIISQSTAANDCPLLLIEPSHKMSSDDKVKAFTRSTSSDEEKEAQQEAASTTDMNASHKAGSSSNHEAEKDDKSAEKPSETQTQNPRPETSERIPEMPVAKNGAREKEDESMVIKSINTTLKGVTSEKSWAVLPASDSEEMASVTVRMKDVSTAISLPQLEENILLGLALEGSKRTLPIEEETPSMFESREISAHRTPLFQISTEAKDAQVPAVPGATQNA 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42107916 42119092 + Bda003051.1 Bda01g00910 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00910 646 Pfam Mechanosensitive ion channel 193 400 IPR006685 GO:0016020|GO:0055085
Bda01g00910 646 MobiDBLite consensus disorder prediction 473 487 - -
Bda01g00910 646 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 2 636 IPR045042 -
Bda01g00910 646 MobiDBLite consensus disorder prediction 488 503 - -
Bda01g00910 646 SUPERFAMILY Sm-like ribonucleoproteins 236 306 IPR010920 -
Bda01g00910 646 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 2 636 - -
Bda01g00910 646 MobiDBLite consensus disorder prediction 451 536 - -
Bda01g00910 646 MobiDBLite consensus disorder prediction 451 472 - -
Bda01g00910 646 Gene3D - 252 307 IPR023408 -
Bda01g00910 646 Gene3D - 149 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00910 Bda-Chr1:42107916 Bda04g00117 Bda-Chr4:2654404 0 dispersed
Bda01g00910 Bda-Chr1:42107916 Bda13g01360 Bda-Chr13:36001522 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00910 K22047 - rcu:8268416 780.4