Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00911 ATGGCTAGAGAGAAGATCAAGATCAAGAAGATTGATAACTTGACTGCTAGACAAGTCACTTTCTCTAAGAGAAGACGAGGGCTTCTCAAGAAAGCAGAGGAGCTCTCTGTTCTCTGCGATGCTGAAGTTGCTCTCCTCATCTTCTCTGCTACTGGAAAGCTCTTTGAATATTCCAGCACAAGACAAATGAGAGGTGAAGATCTTGATGGTTTAAAATTGGACGAGTTGATGCAATTAGAAAAATTGCTCGATGCAGGTCTCACCCGTGTTGTCGAGACTAAGGTTCGTAAGTGTGATTTTATGCAAAAATTGAAGATAACTGTGGATTTATATTGA 336 40.48 MAREKIKIKKIDNLTARQVTFSKRRRGLLKKAEELSVLCDAEVALLIFSATGKLFEYSSTRQMRGEDLDGLKLDELMQLEKLLDAGLTRVVETKVRKCDFMQKLKITVDLY 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42144461 42147759 - Bda003052.1 Bda01g00911 911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00911 111 SUPERFAMILY SRF-like 3 63 IPR036879 GO:0003677|GO:0046983
Bda01g00911 111 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda01g00911 111 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda01g00911 111 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda01g00911 111 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda01g00911 111 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda01g00911 111 PANTHER SERUM RESPONSE FACTOR HOMOLOG 61 97 - -
Bda01g00911 111 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda01g00911 111 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 61 97 - -
Bda01g00911 111 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 61 - -
Bda01g00911 111 Pfam K-box region 59 96 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda01g00911 111 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Bda01g00911 111 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 61 - -
Bda01g00911 111 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda01g00911 111 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00911 - - - ghi:107921301 137.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00911 Bda-Chr1:42144461 Bda15g00490 Bda-Chr15:8043975 1.49E-35 dispersed
Bda01g00911 Bda-Chr1:42144461 Bda01g00917 Bda-Chr1:42346881 1.38E-25 proximal
Bda01g00911 Bda-Chr1:42144461 Bda13g01357 Bda-Chr13:35968082 1.87E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g509 . . Bda01g00911 . . . . . . Cmo12g00151 . . . Car12g00179 . . Cpe07g00167 . . . . . . . . . . . . . . Cone4ag1298 Cone7ag0856 . . . . . . Blo17g00098 . . . Bpe02g01150 . . Bma02g00112 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000411 4 12 1 3 3 2 4 1 1 3 2 1 4 3 3 6 1 8 5 2 3 4 3 3 2 3 3 11 13 4 118
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15403 PF01486 K-box 1.10E-07 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00911 Bda_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0