Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00912 ATGTTTCCTTTCCAGAGCTCTTCCTATCCGAACTGGTTGAATCTTAACGAACACATTCAACATACAAACATGTCGATCAACTCAGTCGACGCCGGCGATTATTCGAACTCGACCTCGATGGATATGAGAAAATCGACGGAAGCCAGCAAGAGCCACAAAGAAGCAGAGAGAAGACGTAGGCAGCGAATCAATGCTCATCTCTCCACCCTACGGAGTCTTCTCCCGAGCACCACCAAGACAGATAAGGCGTCGCTGCTAGCTGAAGTAGTGAGCCACGTGAAGAATCTGAGAAGAGACCTTTGCAGAAACAAAGGCGACGAACCGGAGCTCGGATTAGAGCCATGGCAGTTTCCGACCGAGTTTGACGAGGCGACTCTGAGTTTCTGCGATGACGCAGGAAAGCTCATGAAAGCGATCGTCTGCTGCGCGGACCGGCCGGGTCTGGTCATGGATTTGGCGCAAGCTATCCGGTCGGTTCAAGCCAGAGTGGTCCGTGCTGAAATGACAACATTAGGTACCCGGACAAAAAACGTGGTGGTGTTGAAATGGACTGGCGGAGAAGAAAATATTGCCGCTCTGAAGCGGGCGTTGAAGGCCGTTGTAGACAACCGGATTTCGGATCCTAGAGTGACCCAGCTGGCTCGGGCTAATAATTCAATTAATCTAGAGCATTATTTGAATTTAGGATAG 690 50.43 MFPFQSSSYPNWLNLNEHIQHTNMSINSVDAGDYSNSTSMDMRKSTEASKSHKEAERRRRQRINAHLSTLRSLLPSTTKTDKASLLAEVVSHVKNLRRDLCRNKGDEPELGLEPWQFPTEFDEATLSFCDDAGKLMKAIVCCADRPGLVMDLAQAIRSVQARVVRAEMTTLGTRTKNVVVLKWTGGEENIAALKRALKAVVDNRISDPRVTQLARANNSINLEHYLNLG 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42151035 42151816 + Bda003053.1 Bda01g00912 912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00912 229 SMART finulus 53 102 IPR011598 GO:0046983
Bda01g00912 229 MobiDBLite consensus disorder prediction 45 59 - -
Bda01g00912 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Bda01g00912 229 ProSiteProfiles ACT domain profile. 137 212 IPR002912 -
Bda01g00912 229 PANTHER TRANSCRIPTION FACTOR BHLH30 24 208 IPR045847 GO:0003700|GO:0006355
Bda01g00912 229 PANTHER OS09G0463900 PROTEIN 24 208 - -
Bda01g00912 229 SUPERFAMILY ACT-like 139 202 IPR045865 -
Bda01g00912 229 Gene3D - 41 104 IPR036638 GO:0046983
Bda01g00912 229 Pfam Helix-loop-helix DNA-binding domain 50 96 IPR011598 GO:0046983
Bda01g00912 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 116 IPR036638 GO:0046983
Bda01g00912 229 Gene3D - 138 207 - -
Bda01g00912 229 MobiDBLite consensus disorder prediction 30 59 - -
Bda01g00912 229 MobiDBLite consensus disorder prediction 30 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00912 - - - jre:109013704 219.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00912 Bda-Chr1:42151035 Bda10g01120 Bda-Chr10:45186331 3.12E-36 dispersed
Bda01g00912 Bda-Chr1:42151035 Bda11g01131 Bda-Chr11:11301471 5.50E-36 transposed
Bda01g00912 Bda-Chr1:42151035 Bda01g02101 Bda-Chr1:57108307 3.37E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g504 . . Bda01g00912 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag1448 . . . . . . . . . . Bpe02g01151 . Bma01g01373 Bma02g00111 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007814 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 2 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15404 PF00010 HLH 3.30E-12 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00912 Bda_Chr01 FPKM 7.272861 9.090568 12.983323 10.525743 0.83257 1.216481 0.863479 22.357626 22.958336