Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00916 ATGGCTTCTATATCAGGCATTTGCTCGTCTTCCTCGACATTCAAACCCAAGACTCTTCTCTCAAGAGCAACAAATTCTTTCCGCACACAGTCGGTTGCATTTCCGGCGCGTTCCAAGCTGACGGAGCAGAAATTGGGCGCACTTCAGGCTCATGCCGTGGCAAAGGAGATTTCGGCGGAATTATCTGGCACCGATGGAGGTTTTAGAAAGGAGAAAAAGGCGTTGGAGAAAGATCCTCGCGCGTTGTGGCAGAGATACGTTGACTGGCTGTACCAACATAAGGAGCTTGGATTGTTTCTGGACGTGAGTCGGATCGGATTCACAGACGAGTTCGTGGAGGAGATGGAGCCCAGGTTCCAGGCTGCCTTACGAGAAATGGAAAAACTTGAGAAGGGCGCTATTGCAAATCCCGATGAGGGACGCATGGTTGGTCACTACTGGCTGAGGAACTCTAAGCTCGCGCCAAATTCGTTTTTGAGATTGCAGATCGAGAAAACTCTAGACGCTGTCTCCGAGTTTGCGGCCGACGTCGTCAGCGGTAAGATTAAGCCACCAGGTTCTCCCCGCTTTACTCAAATACTGTCTGTTGGGATTGGAGGCTCAGCTCTCGGACCTCAGTTCGTTGCCGAGGCATTGGCTCCTGACAATCCTCCTTTGAAGATAAGATTCATTGACAATACAGATCCAGCAGGGATTGATCATCAGATTGCACAACTTGGAGAGGAGCTGGCTTCTACTCTTGTAATAGTGATTTCAAAGAGTGGAGGTACTCCTGAAACTAGAAATGGTTTATTGGAAGTACAGAAGGCCTTTCGTGAAGCTGGACTGATATTTGCAAAACAGGGTGTTGCAATAACACAAGAAAATTCGTTGTTGGACAACACTGCAAGAATTGAAGGGTGGTTGGCCAGATTCCCTATGTTTGACTGGGTGGGTGGAAGGACATCTGAAATGTCGGCTGTTGGTTTGCTTCCAGCTGCATTACAGGGAATTGACATTAGAGGAATGCTTTCTGGAGCTGCTTTAATGGACGAGGCTAATAGAACTACGGTGCTTAAGAATAACCCTGCAGCACTGCTAGCTTTATGCTGGTATTGGGCTTCTGATGGTGTGGGATCTAAGGACATGGTGGTTCTTCCGTATAAGGATAGCTTGTTATTATTTAGTCGTTATCTGCAGCAACTGGTCATGGAATCTCTAGGAAAGGAGTTTGACCTTGCTGGCAATCAGGTGAATCAGGGCCTTACAGTGTATGGAAACAAAGGGAGCACAGATCAGCATGCCTATATCCAACAACTTCGAGAAGGCGTCCACAATTTTTTTGTGACGTTCATAGAAGTGCTTCGAGATAGACCCCCTGGTCATGATTGGGAACTTGAGCCAGGTGTTACATGTGGAGACTATCTGTTTGGTATGCTACAGGGAACAAGGTCAGCTCTTTATGCTAATCGCCGCGAGTCAATCACAGTCACTGTTCAAGAAGTGACACCAAAATCTGTCGGAGCTCTTGTAGCACTTTATGAGCGTGCTGTTGGGATATATGCCTCTCTTGTTAATATTAATGCTTACCATCAGCCTGGTGTAGAAGCTGGAAAAAAAGCTGCTGGGGCAGTATTAGCTCTCCAGAAGCGGGTTTTGCAAGTGCTAAATGAGGCCACCTGTAAAGAGCCTGTTGAACCTTTGACACTCGACGAAGTTGCGGATCGCTGCCATGCACCAGAGGATGCTGAAACATTAGAAGATCTACAAGAATGGAAGACAGCACTAGAGAATGCTCTTTCACAAGCACCAAGTGCTGGTCACTCAATGGGTCAAAATGGTGTCTTCAAGAATGATCAAACTGACTCACTTGATGGAACTTCAGATCAATTAAAGAATAGGCAGCCTGCAAGATCTACTGTCCTTGGACGACCTCTTTTACTTGCTCTGGAAGATGTCGATGGAACACCCTCTTTTTTGGAGAAAGCTCTTAAGTTTATGGAAGAACACGGAGTCAAAGTGGAAGGAATTTTGAGGCAAGCTGCAGATGTTGACGATGTTGAACGTCGAATTCGGGAATATGAACAGGGAAAAAGTGAGTTTTCTCCTGAAGAGGATGCACACGTTATTGGTGATTGTGTGAAGTATGTTCTTCGGGAATTGCCTTCATCTCCGGTTCCAGCATCTTGCTGCAATGCATTACTTGAAGCATGTCGGACTGATCGAGGTGTAAGAGTAAATGCTATGCGAACAGCAATATATGAAACATTCCCTGAACCAAATCGCCGCTTGCTTCAGAGGTGGGTTGAGATCCAGCAATTTGAGGCCAGAAAACGTGAATTGCAAAATAAAATTGCAGAGGAGGTTAAGGAGAATGCAATTCTCCAAGTTGGTCTAGAAAGACGGAAGAAGTCCCTACATGAGCACCGCCAAACACTTGAGCAAGATGTAGCAAAACTACAAGAACGGTTGCAGAAAGAGAGGGATTTGAGAGCAGCTCTTGAAGCTGGACTCAACGGATCTCAAGTTTCTTTGCCCAGCTTAGCAAATATTGATGAAAAGACTAAGGCAGAGCTCGAAGAAATATCGATATTGGAGGTAGACATTGTCAATTTGAAGCAAAAGATGGATGGGCTTGTAGTGCAGCTTGATCAGCAACATCAAACAAATTACAAGTTTATATTTAAATTAACTACTATGGTATACAGAAAAGGTAAACAGATGGATGCTGACGTAATGCACCAACCTTTTTTTGAAAGGTCCAAAAGTAAGGAAACTAATTTAGATAAAAAGGGAAATGAAAATGAGAGGAAGCTCGAACCTGCACTCATCGCAAGTAAGAATCCACCTCAGAACCAAAATCTGAATTCAGTTCGTAATTCTGTTGGGGGTCCAATTGATTTTTGTGCAGCAGAACCAGAACAAGGGAGGTATAATGCTCCAGTCATTTCCAAGAGGAGTAGTATCAGGGGTGAGGGCGCCAATTCGACAAGTTCTGCACTGACAAAGTTGACAACCAGGCTAAACTTTTTGAAAGAACGTCGCAGTCAGATAGCAAATGAACTCCAAAATATGGACAAAGTCCGAGTTTCAAGTCAGTCTTTTGAAAACATTGAGAAAGACAAAGGATCAGAGCCAGACATTTCCATCCAAATTTCAGAAAACTCTCATGGATCGGCTGCTCAATCTATCCAAAAACGAGAAAAGGGTAGAACGTTAGACTATTTTCAATCCCTCCAGACCTCAGAAAATGAGGCAGTAAATTCCGAAGATACGAGAAAATCATACACAGACGTAGGAAAAAGGTCAGAGGGTGGGCGACTGCAGAGTTTGGAGAGAGGAAAATCTGACACTTACCCGACAGACCAAGTAGATGACTGA 3360 44.76 MASISGICSSSSTFKPKTLLSRATNSFRTQSVAFPARSKLTEQKLGALQAHAVAKEISAELSGTDGGFRKEKKALEKDPRALWQRYVDWLYQHKELGLFLDVSRIGFTDEFVEEMEPRFQAALREMEKLEKGAIANPDEGRMVGHYWLRNSKLAPNSFLRLQIEKTLDAVSEFAADVVSGKIKPPGSPRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGEELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLIFAKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIRGMLSGAALMDEANRTTVLKNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLAGNQVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANRRESITVTVQEVTPKSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGAVLALQKRVLQVLNEATCKEPVEPLTLDEVADRCHAPEDAETLEDLQEWKTALENALSQAPSAGHSMGQNGVFKNDQTDSLDGTSDQLKNRQPARSTVLGRPLLLALEDVDGTPSFLEKALKFMEEHGVKVEGILRQAADVDDVERRIREYEQGKSEFSPEEDAHVIGDCVKYVLRELPSSPVPASCCNALLEACRTDRGVRVNAMRTAIYETFPEPNRRLLQRWVEIQQFEARKRELQNKIAEEVKENAILQVGLERRKKSLHEHRQTLEQDVAKLQERLQKERDLRAALEAGLNGSQVSLPSLANIDEKTKAELEEISILEVDIVNLKQKMDGLVVQLDQQHQTNYKFIFKLTTMVYRKGKQMDADVMHQPFFERSKSKETNLDKKGNENERKLEPALIASKNPPQNQNLNSVRNSVGGPIDFCAAEPEQGRYNAPVISKRSSIRGEGANSTSSALTKLTTRLNFLKERRSQIANELQNMDKVRVSSQSFENIEKDKGSEPDISIQISENSHGSAAQSIQKREKGRTLDYFQSLQTSENEAVNSEDTRKSYTDVGKRSEGGRLQSLERGKSDTYPTDQVDD 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42298523 42324426 - Bda003061.2 Bda01g00916 916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00916 1119 MobiDBLite consensus disorder prediction 596 630 - -
Bda01g00916 1119 Pfam RhoGAP domain 650 760 IPR000198 GO:0007165
Bda01g00916 1119 CDD SIS_PGI_1 164 328 IPR035476 -
Bda01g00916 1119 SUPERFAMILY GTPase activation domain, GAP 633 760 IPR008936 GO:0007165
Bda01g00916 1119 Coils Coil 764 784 - -
Bda01g00916 1119 Coils Coil 994 1021 - -
Bda01g00916 1119 MobiDBLite consensus disorder prediction 1041 1059 - -
Bda01g00916 1119 CDD RhoGAP 650 760 - -
Bda01g00916 1119 PRINTS Glucose-6-phosphate isomerase signature 305 323 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 PRINTS Glucose-6-phosphate isomerase signature 515 528 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 PRINTS Glucose-6-phosphate isomerase signature 381 402 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 PRINTS Glucose-6-phosphate isomerase signature 193 212 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 PRINTS Glucose-6-phosphate isomerase signature 483 501 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 PRINTS Glucose-6-phosphate isomerase signature 501 515 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 MobiDBLite consensus disorder prediction 1030 1119 - -
Bda01g00916 1119 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 1 592 - -
Bda01g00916 1119 Pfam Phosphoglucose isomerase 125 449 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 Pfam Phosphoglucose isomerase 481 540 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 75 548 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 Hamap Glucose-6-phosphate isomerase [pgi]. 95 542 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 Gene3D - 187 326 - -
Bda01g00916 1119 ProSiteProfiles Rho GTPase-activating proteins domain profile. 641 824 IPR000198 GO:0007165
Bda01g00916 1119 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 1 592 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 ProSitePatterns Phosphoglucose isomerase signature 2. 515 532 IPR018189 GO:0004347|GO:0006094|GO:0006096
Bda01g00916 1119 SMART RhoGAP_3 647 821 IPR000198 GO:0007165
Bda01g00916 1119 SUPERFAMILY SIS domain 81 542 IPR046348 GO:0097367|GO:1901135
Bda01g00916 1119 MobiDBLite consensus disorder prediction 1080 1104 - -
Bda01g00916 1119 Gene3D - 327 524 - -
Bda01g00916 1119 Pfam Leucine-zipper of ternary complex factor MIP1 799 879 IPR025757 -
Bda01g00916 1119 Gene3D Rho GTPase activation protein 618 777 IPR008936 GO:0007165
Bda01g00916 1119 CDD SIS_PGI_2 374 538 IPR035482 -
Bda01g00916 1119 Coils Coil 796 830 - -
Bda01g00916 1119 Gene3D - 40 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00916 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - cpap:110825977 978.008
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00916 Bda03g00461 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01121 Bda-Chr4:62044065 Bda01g00916 Bda-Chr1:42298523 1.67E-34 transposed
Bda07g00766 Bda-Chr7:9089857 Bda01g00916 Bda-Chr1:42298523 1.15E-35 transposed
Bda13g00729 Bda-Chr13:8788078 Bda01g00916 Bda-Chr1:42298523 3.04E-44 transposed
Bda01g00916 Bda-Chr1:42298523 Bda03g00461 Bda-Chr3:3984819 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g489 . . Bda01g00916 Bda03g00461 . Bpe04g00422 Bma04g00436 . . Cmo12g00145 . . . Car12g00170 . . Cpe07g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01160 . . . . . . Cma12g00187 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0032580 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00916 Bda_Chr01 FPKM 2.562963 2.745172 0.499964 0.645911 6.840287 6.531672 6.329511 0.737044 0.578581