Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00921 TTACTGGAAGAATGTATAAACAGAAATTCGGCTTACGAAACCGAAGCTATTCATGCTCATATCATTAAAAAAGGAATCTACGAAGAACTATTTCTCATGACGTTCCTCGTGAATGTTTATGCAAAATGCCGTAACATGGAATATGCCCGCAAAGTTTTCGACAATTTGCCGAGGAGAAATGTTGTTGCCTGGACAACCCTAATGACAGGATATGTTCACCAATTGCAGCCACAGATTGCAATTGAAGTTTTCCTCGAAATGCTAGATGCAGGGGCTTATCCAACAAACTACACTCTGGGAATTGTTCTAAACGCATGTACTTCCTCAAACTCCACTGAATTTGGGAGGCAAATTCATGCCTATATTATTAAATACCACCTTGATTTTGACACTAGTATTGGGAACTCTCTTTCAAGCTTTTACTCTAAAACTCGAAAGTTGAAATCTGCCATAAAATCATTTAAGAGGATCCGAGAAAAGAATGTGATCTCTTGGACTGCAGTTATATCGGCTTGTGGGGAAAATGGGGCTGCAGTGCAAGGTCTGAGTTTTTTGGCAGAAATGTTGGCTCAAGGAATTGAACCTAATGAGTTCACCTTCACTAGTGTCTTGAGCTTGTGCTGTGTAACGCTGACATTGGGTTTAGGAGCTCAAATTCACTCATTAAGCCTGAAACTAGGCTACGAATCGAGCTTGCCGATAAGAAACTCTGTGATGTACTTGTACTTAAAATGTGGATGGATTCATGAGGCTTACAAGGTGTTTGAAGGAATGGAAGTTGTAAATATAGTCACGTGGAATGCAATGATTGCAGGCTATGCAAAAATGATGGATTCTAATGATCTCTCGGCATACCGAAATGGAAATGAAGCCTTGAATATTTTCTTGAAATTGCATCGATCGAACATAAAGCCCGATTTGTTCACATTTTCTAGTGTTTTAACTGTGTGTAGTAGTTTGGTGGCCTTAGAACAAGGGGAGCAAGTTCATGCTCAAACCATCAAGACCGGATTTCTGTCTGATGTTGTAGTGGGAACTGCACTTGTTAATATGTATAATAAATGTGGAAGCATCGAAAAAGCGTGTAGAGCTTTCCTCGAAATGTCCACTCGAACTTTAATATCGTGGACTTCGATGATAACTGGATTTTCACAGCACGGACGGTCTCGACAAGCCCTTCAGCTTTTCGAAGACATGTTACTGGCAGGGGTTAGGCCAAACCAGGTGACTTTTGTGGGTGTTTTATCAGCTTGTAGCCATGCCGGAATGGTAGAAGAAGCATTTGGGTATTTCAACCTGATGCAAAAGGAGTATAATATTAGACCTGTTATGGACCACTTTGCCTGCATGATAGATATGCTTGTGCGATTGGGTCGGCTGGATGAAGCTTTTGATTTCATAAAGAAGATGGATTTTGAGCCTAATGAGTGCATATGGAAGATCTTAATTGCAGGCTGTAGAATTCAAGGGAATTTAGAACTTGGGTTTTTTGCAGCTGAGGAGCTACTCAAACTCAAGCCTAGAGATACCGAGACTTACGTCTCGTTGCTGAACATGTACCTCTTGGCAGAGCGGTATAAGGATGTTTCGAGAGTGAGAAAGCTGATGAATGAAGAGAAACTTGAGAAATTGAATGATTGGAGCTGGATTAGCATTAAAAACAAGGTTTATTCATTTAAACCCAACGATAAGTCCCATTATAACAGCAAGGAGATGTATGAACTATTAGAGAATTTACTTGAAGAAGTCAAGAATCTTGGGTATGAGTCTGTTGAGCGTATGGAAGTAGAAGAAGAAGAAGAAGAAGCTGAAAACGAAGAAAAAGTTCTCGAATCCACCGTCCATCACAGCGAAAAGTTAGCTGTTGCTTTTGGATTGTTGAAACTGCCAAATGCTGCGCAGATTCGGGTTATCAAGAGCACCACCATGTGTGGGGACTGCCATAGCTTTTTAAGGTTTGTTTCTGTATTGACTGCTAGAGAAATCATTATCAGAGATGGTAAGAGGCTTCATCAATTTGTCAATGGACAGTGTTCTTGTGGAGATAGCAATTTTGCTTGA 2061 40.47 LLEECINRNSAYETEAIHAHIIKKGIYEELFLMTFLVNVYAKCRNMEYARKVFDNLPRRNVVAWTTLMTGYVHQLQPQIAIEVFLEMLDAGAYPTNYTLGIVLNACTSSNSTEFGRQIHAYIIKYHLDFDTSIGNSLSSFYSKTRKLKSAIKSFKRIREKNVISWTAVISACGENGAAVQGLSFLAEMLAQGIEPNEFTFTSVLSLCCVTLTLGLGAQIHSLSLKLGYESSLPIRNSVMYLYLKCGWIHEAYKVFEGMEVVNIVTWNAMIAGYAKMMDSNDLSAYRNGNEALNIFLKLHRSNIKPDLFTFSSVLTVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIEKACRAFLEMSTRTLISWTSMITGFSQHGRSRQALQLFEDMLLAGVRPNQVTFVGVLSACSHAGMVEEAFGYFNLMQKEYNIRPVMDHFACMIDMLVRLGRLDEAFDFIKKMDFEPNECIWKILIAGCRIQGNLELGFFAAEELLKLKPRDTETYVSLLNMYLLAERYKDVSRVRKLMNEEKLEKLNDWSWISIKNKVYSFKPNDKSHYNSKEMYELLENLLEEVKNLGYESVERMEVEEEEEEAENEEKVLESTVHHSEKLAVAFGLLKLPNAAQIRVIKSTTMCGDCHSFLRFVSVLTAREIIIRDGKRLHQFVNGQCSCGDSNFA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42405025 42407085 + Bda003068.1 Bda01g00921 921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00921 686 Gene3D Tetratricopeptide repeat domain 432 659 IPR011990 GO:0005515
Bda01g00921 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 60 94 IPR002885 -
Bda01g00921 686 Gene3D Tetratricopeptide repeat domain 113 211 IPR011990 GO:0005515
Bda01g00921 686 Gene3D Tetratricopeptide repeat domain 1 112 IPR011990 GO:0005515
Bda01g00921 686 PANTHER OS01G0913400 PROTEIN-RELATED 9 619 - -
Bda01g00921 686 Pfam PPR repeat 236 259 IPR002885 -
Bda01g00921 686 Pfam PPR repeat 346 369 IPR002885 -
Bda01g00921 686 Pfam PPR repeat 449 470 IPR002885 -
Bda01g00921 686 Pfam PPR repeat family 160 208 IPR002885 -
Bda01g00921 686 Pfam PPR repeat family 374 419 IPR002885 -
Bda01g00921 686 Pfam PPR repeat family 59 106 IPR002885 -
Bda01g00921 686 Pfam PPR repeat family 262 317 IPR002885 -
Bda01g00921 686 Pfam E motif 491 550 IPR046848 -
Bda01g00921 686 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Bda01g00921 686 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Bda01g00921 686 TIGRFAM PPR: pentatricopeptide repeat domain 447 471 IPR002885 -
Bda01g00921 686 TIGRFAM PPR: pentatricopeptide repeat domain 163 197 IPR002885 -
Bda01g00921 686 TIGRFAM PPR: pentatricopeptide repeat domain 62 95 IPR002885 -
Bda01g00921 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Bda01g00921 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Bda01g00921 686 Coils Coil 591 616 - -
Bda01g00921 686 Gene3D Tetratricopeptide repeat domain 212 282 IPR011990 GO:0005515
Bda01g00921 686 Gene3D Tetratricopeptide repeat domain 283 431 IPR011990 GO:0005515
Bda01g00921 686 Pfam DYW family of nucleic acid deaminases 603 683 IPR032867 GO:0008270
Bda01g00921 686 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 9 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00921 - - - zju:107427123 1007.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00921 Bda-Chr1:42405025 Bda07g01927 Bda-Chr7:36749323 2.30E-50 dispersed
Bda01g00921 Bda-Chr1:42405025 Bda07g00675 Bda-Chr7:8038499 1.38E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g554 . . Bda01g00921 . . . . . . . . . . . . . . Bhi04g00908 . . . . . Lcy13g1457 Cla08g01181 . . . . . . . . Cone17ag1161 . . . . . . . . . Bpe02g01166 . Bma01g01366 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01042 Csa02g02228 Chy03g01289 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010527 1 1 1 1 1 1 2 1 1 1 1 1 2 0 0 2 1 1 2 1 1 0 1 1 0 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00921 Bda_Chr01 FPKM 4.956661 4.704732 17.141504 18.026197 8.356179 7.514622 5.953122 25.438517 23.87542