Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00928 CTTCTCCTTGAGCGACTTTCTGTTGATTATGGAAAGAAATCGAAGCTTGGTTTTACTGTCTATCCTTCACCACAGGTTTCTACTTCTGTTGTGGAGCCCTATAATAGTGTTCTGTCAACCCACTCTCTCCTTGAGCATACAGATGTTTCTGTGCTTCTCGATAATGAGGCCATCTATGACATTTGTCGGCGATCACTTGATATCGAGCGGCCCACCTACACCAATCTCAATCGCCTCGTCTCTCAGGTTATTTCATCCCTCACTGCCTCTCTAAGGTTCGATGGTGCTCTCAATGTTGATGTCACTGAGTTTCAGACGAACTTGGTTCCCTACCCCAGGATCCACTTCATGCTTTCTTCGTATGCTCCTGTCATCTCGGCTGAGAAGGCGTATCATGAGCAATTGTCGGTGTCCGAAATCACCAACAGTGCTTTCGAGCCTTCTTCCATGATGGCTAAATGTGACCCTAGACATGGGAAATACATGGCTTGCTGCTTGATGTACCGAGGTGACGTCGTTCCCAAGGACGTCAATGCAGCCGTGGCGACCATTAAAACCAAGCGAACCATCCAGTTTGTAGACTGGTGTCCAACTGGATTCAAGTGTGGTATCAATTACCAGCCACCCACTGTTGTACCAGGGGGTGACCTTGCTAAGGTGCAGAGGGCCGTGTGCATGATCTCCAACTCAACAAGTGTAGCAGAAGTCTTCTCCCGCATTGACCACAAGTTTGATCTCATGTATGCTAAGCGTGCTTTTGTGCACTGGTACGTTGGTGAAGGGATGGAAGAAGGAGAATTTTCAGAGGCTCGTGAGGATCTTGCTGCTCTCGAAAAGGATTACGAGGAAGTTGGTTTAGAATCTGGTGAAGGAGATGAAGGGGATGAAGGAGAAGAATACTGA 903 47.73 LLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGLESGEGDEGDEGEEY 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42584690 42585672 + Bda003076.1 Bda01g00928 928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00928 300 SUPERFAMILY Tubulin C-terminal domain-like 95 284 IPR008280 -
Bda01g00928 300 Coils Coil 267 287 - -
Bda01g00928 300 PRINTS Tubulin signature 27 40 IPR000217 GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Tubulin signature 229 257 IPR000217 GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Tubulin signature 41 61 IPR000217 GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Tubulin signature 2 23 IPR000217 GO:0005874|GO:0007017
Bda01g00928 300 Gene3D - 118 232 IPR037103 -
Bda01g00928 300 PANTHER TUBULIN 1 296 IPR000217 GO:0005874|GO:0007017
Bda01g00928 300 Pfam Tubulin/FtsZ family, GTPase domain 2 62 IPR003008 GO:0005525
Bda01g00928 300 PRINTS Alpha-tubulin signature 209 228 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Alpha-tubulin signature 170 191 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Alpha-tubulin signature 10 21 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Alpha-tubulin signature 63 75 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Alpha-tubulin signature 234 250 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Alpha-tubulin signature 271 287 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Alpha-tubulin signature 196 209 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda01g00928 300 PRINTS Alpha-tubulin signature 123 138 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda01g00928 300 CDD alpha_tubulin 1 284 - -
Bda01g00928 300 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 94 IPR036525 -
Bda01g00928 300 Pfam Tubulin C-terminal domain 112 241 IPR018316 -
Bda01g00928 300 Gene3D Helix hairpin bin 233 285 IPR023123 -
Bda01g00928 300 PANTHER TUBULIN ALPHA CHAIN 1 296 - -
Bda01g00928 300 SMART Tubulin_C_4 97 242 IPR018316 -
Bda01g00928 300 Gene3D Tubulin/FtsZ, GTPase domain 1 117 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00928 K07374 TUBA; tubulin alpha - qsu:111996881 566.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00928 Bda-Chr1:42584690 Bda06g01169 Bda-Chr6:41122368 0 dispersed
Bda01g00927 Bda-Chr1:42550327 Bda01g00928 Bda-Chr1:42584690 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g577 . . Bda01g00928 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00080 Blo18g00091 . . Bpe02g01727 Bpe14g00506 Bma01g00727 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00928 Bda_Chr01 FPKM 24.306784 26.859919 16.004339 16.966536 30.039654 30.962931 28.211912 26.382334 26.456161