Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00932 ATGAAAAGTTTGCGGCTTTTCCATCTTTTGCTCCACTTTTTCACCTGGGTTTTAACCCAGTTCAGCAGCTTTGCCTTGACACCTCCACCGGCAGTGCAGTGCAACGAAAAGGGTTGCACCCTCCGAAACTCCTACGGCGTTTGGGGAGATAGAAAACTCTGCAAATTCTCTACTGTTAAGTACCCTACGACGGAAGAAGAACTGCGTTTAGCCGTGGCCTACGCGAACAAGTACAAAATCAAACTCAAAGTTGTGAGCAAATTCTCACACACCATTCCAAAGCTAGCTTGTGCAGACGAAGAACAATCCTCGACTTCATTGCTAATTAGCACTGTGAATTACAGTTCCGGCATTGTTATAGACGAAGAAAATCTAGCCGTGACAGTAGATTCCGGTGTCGGGCTCCGGCAGCTGATTGACCAGGTTGAAGCTGCGGGGTTGAGCCTGGTGGCTGCGCCGTACTGGGAGGGAGTGAGCGTGGGGGGGCTGATCAGCACCGGTGCTCATGGAAGTTCATGGTGGGGGAAAGGAGGGTCTGTTCATGATCACGTCATCGGAATTAGTCTGGTTATTCCGGCGAAATCTGATGAAGGATACGCTAAAATTATGAGGCTGGAAGAAAATGATCCAATTCTCAACGCTGCCAAAGTTTCGTTGGGAGTTTTAGGTGTTATCTCCAAGGTAAAGCTGTCGCTGGAGAGAAGATTTAAGAGGAGCATAAGCTATAATTTTACAGACGATGATGAAATGGAGGATCTGTACAGAGAGCATGCGAAGAAGTATGAATTTGCAGACATAACTTGGTACCCGTCAAAGCATTTGGCAGTGTACAGATATGATCGGAGAGTTGGTTTAGATGTTTCCGGCGATGGTGTTTACGACTTTATCGGATTTCAACCCAATTCTATCCTCATTTCCAAAACAACGTTGAACAATACAGAAAAAACGTTTGAAAGAGAAGGAAATGCGAAGGGAAAATGCTTGATGGCTTCGTCCGTCGTGGGATACAAGAAGCTTGTCGGAAATGGGTTGAAGAACAATGGCTTGATTTTCACCGGCTACCCAGTTGTCGGATTTCAAGCAAAAATGCAAACTTCAGGCTTCTGTTTGTATTCGACAGCGATAGATACCACTTGCGCGTGGGATCCGAGAATAAAAGGTCTATTTTTCTACGAAACGACCGCCATTTTCACACCTTCAAGCTTTGACCTCTTTATCAAAGACGTAAAATCACTGCGAGACCAAAACCCAGAAAATTTCTGCGGCGTAGACCTCTACAATGGCTTCCTAATCCGATTCATCAAGGGCTCCGATGCTTTCTTAGGACAATCTGAAGATTCGGTGGTGGTCGATTTCAACTACTATCGCTCAGACGAGGCTTCAGATCCAAGATTAAACGAGGATGTGTGGGAAGAGGTTGAGCAAATGGCGTTTTTCAAGTATGGAGCTAGACCGCATAGGGGGAAAAATCGGAACGTAGGGTTCTTGAATGTGAGTGGTAAATACCCAAAGTTCGACAAGTTTTTGTCGGCCAAGAAACGATTGGATCCTCAAAATATGATGTCGAGCAAGTGGTCGGACAAGGTGCTTTTCGGAGTGGAGACTGAAAATGGCGATGGGTGTGCATTGGAAGGACACTGCATTTGCTCTGAAGACCGCCATTGTTGGCCGGAGAAAGGGTATTTCTGCAGATATGGTCTTGTTGATGAGAAAGCTAGAGTCTGTAGGCATTATTCATTTTCCATTGAATGA 1752 45.66 MKSLRLFHLLLHFFTWVLTQFSSFALTPPPAVQCNEKGCTLRNSYGVWGDRKLCKFSTVKYPTTEEELRLAVAYANKYKIKLKVVSKFSHTIPKLACADEEQSSTSLLISTVNYSSGIVIDEENLAVTVDSGVGLRQLIDQVEAAGLSLVAAPYWEGVSVGGLISTGAHGSSWWGKGGSVHDHVIGISLVIPAKSDEGYAKIMRLEENDPILNAAKVSLGVLGVISKVKLSLERRFKRSISYNFTDDDEMEDLYREHAKKYEFADITWYPSKHLAVYRYDRRVGLDVSGDGVYDFIGFQPNSILISKTTLNNTEKTFEREGNAKGKCLMASSVVGYKKLVGNGLKNNGLIFTGYPVVGFQAKMQTSGFCLYSTAIDTTCAWDPRIKGLFFYETTAIFTPSSFDLFIKDVKSLRDQNPENFCGVDLYNGFLIRFIKGSDAFLGQSEDSVVVDFNYYRSDEASDPRLNEDVWEEVEQMAFFKYGARPHRGKNRNVGFLNVSGKYPKFDKFLSAKKRLDPQNMMSSKWSDKVLFGVETENGDGCALEGHCICSEDRHCWPEKGYFCRYGLVDEKARVCRHYSFSIE 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42651377 42653304 - Bda003081.1 Bda01g00932 932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00932 583 SUPERFAMILY FAD-binding/transporter-associated domain-like 45 232 IPR036318 GO:0050660
Bda01g00932 583 TIGRFAM pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase 28 576 IPR010030 -
Bda01g00932 583 Gene3D - 399 492 - -
Bda01g00932 583 Pfam D-arabinono-1,4-lactone oxidase 431 528 IPR007173 GO:0003885|GO:0016020
Bda01g00932 583 PANTHER GULONOLACTONE OXIDASE 15 577 - -
Bda01g00932 583 ProSiteProfiles PCMH-type FAD-binding domain profile. 51 235 IPR016166 GO:0071949
Bda01g00932 583 Gene3D - 116 233 IPR016169 -
Bda01g00932 583 Pfam FAD binding domain 59 192 IPR006094 GO:0050660
Bda01g00932 583 PANTHER L-GULONOLACTONE OXIDASE 3 15 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00932 K00103 GULO; L-gulonolactone oxidase [EC:1.1.3.8] - rcu:8271194 832.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00397 Bda-Chr1:30335946 Bda01g00932 Bda-Chr1:42651377 1.92E-08 dispersed
Bda01g00932 Bda-Chr1:42651377 Bda13g00243 Bda-Chr13:2998000 6.06E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g313 . . . . Bpe02g01177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g00932 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005085 3 1 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 6 1 1 1 1 1 0 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00932 Bda_Chr01 FPKM 10.481482 13.166485 14.07338 13.456488 14.798077 12.729451 13.513311 11.677488 11.239072