Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00937 ATGGCCGCTGAAGCTCGACATTCAGAAGCTGAGAGCACCTCGAATTCTAACTCCAACTCTTCCTCATCCCCACCGTCCCCTTCTTCGACACCCTCCACTCACACTCTTCAGGACACTCTTTCTAACCCTGATTTTTCTTCGTCGGAACTGAAAAAGAACGAGCAAATGAGAGATACCAGCAGGCACCCACATTTCAGAGGCGTTCGGAAGCGCAGTTGGGGCAAATGGGTTTCTGAAATTCGCGAGCCTCGCAAGAAATCGCGCATTTGGCTCGGAACTTTCCCGACGCCGGAAATGGCTGCCAGAGCTCACGACGTCGCCGCTTTAAGCATCAAAGGTAGTTCCGCAATTCTTAACTTCCCCGACCTCGTTGACTTTCTTCCACGCCCGGCATCTCTCGCTCCGAGAGATGTCCAAGCGGCGGCAGTGAAGGCAGCTCAGATGTACAAATTTGAGTCGGCATCTTCGACGCCGTCGTCTTCGTTAGTTTCGGCGGCGTCGACGGAGAACGAATCGGACGATTTGGGGGAGATCGTTGAGCTGCCAAGCTTAGGAACGAGTTACGAGTCGAACGAGTTGAGGAACGAAATCGTGTTGGTGGACTCAGTGGATGGGTGGTTATACCAACCGCCATGGTTGCAAAGCTTGGAGGATAGTGGATTCAACAATGCGAGCGAGGAGTTGACTGCCGGAAGTTGCGGTTTGATAGCCGGCAGTTTTGAGAGTTTGCTTTGGGAGTATTGA 744 52.69 MAAEARHSEAESTSNSNSNSSSSPPSPSSTPSTHTLQDTLSNPDFSSSELKKNEQMRDTSRHPHFRGVRKRSWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPDLVDFLPRPASLAPRDVQAAAVKAAQMYKFESASSTPSSSLVSAASTENESDDLGEIVELPSLGTSYESNELRNEIVLVDSVDGWLYQPPWLQSLEDSGFNNASEELTAGSCGLIAGSFESLLWEY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42745157 42745900 + Bda003088.1 Bda01g00937 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00937 247 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Bda01g00937 247 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Bda01g00937 247 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Bda01g00937 247 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Bda01g00937 247 MobiDBLite consensus disorder prediction 1 68 - -
Bda01g00937 247 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Bda01g00937 247 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Bda01g00937 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 246 - -
Bda01g00937 247 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Bda01g00937 247 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 6 246 - -
Bda01g00937 247 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Bda01g00937 247 MobiDBLite consensus disorder prediction 8 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00937 Bda-Chr1:42745157 Bda03g00430 Bda-Chr3:3710423 7.76E-71 dispersed
Bda11g01417 Bda-Chr11:18701320 Bda01g00937 Bda-Chr1:42745157 5.12E-59 transposed
Bda01g00937 Bda-Chr1:42745157 Bda11g00829 Bda-Chr11:8213516 3.78E-67 wgd
Bda01g00937 Bda-Chr1:42745157 Bda13g01332 Bda-Chr13:35584239 1.98E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15406 PF00847 AP2 1.90E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00937 K09286 - zju:107420677 267.314