Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00942 AGGAAGAGAATTGTATCTGGTGTTCAGCCAACTGGGTCTGTTCATCTCGGGAATTATCTTGGCGCCATAAAAAATTGGATTCCTCTACAGAATACATATGAAACACTTTTCTTTATTGTGGACCTTCATGCGATCACGTTACCATATGATAGAGAACATCTATCTAGTGCAACAAGAGATACCGCAGCAATCTATTTGGCATGTGGTGTAGACACCTCCAAGGCCTCTGTTTTTGTACAGTCTCACGTACGTGCACATGCGGAATTGATGTGGCTTCTTTCCTCCTCTACGCCAATTGGTTGGCTTAACAAAATGATTCAGTTTAAAGAAAAATCTCGCAAGGCGGGAGATGAAAATGTTGGAGTTGCTCTTTTAACTTATCCGGTCCTTATGGCTTCAGATATTCTTTTATACCAGTCCGACTTTGTCCCCGTTGGTGAAGACCAGAAGCAACACCTAGAGTTGACTCGTGAGTTAGCTGAGCGTGTTAATTACTTATATGGAGGCAGGAAGTGGAAGAAATTGGGAGGACGTGGAGGTACTATTTTTAAGGTCCCTGAGCCCCTTATACCACCAGCTGGAGCAAGAGTGATGTCCTTAACTGATGGTCTGGCAAAGATGTCCAAGTCTGCATCTTCAGATCAGTCCAGAATTAATCTTCTTGATTCAAAAGATGTGATAGCAAGCAAGATAAAACGATGCAAAACAGACTCATTTCCAGGATTGGAGTTTGACAATCCTGACAGACCTGAATGCAATAATCTTCTTTCCGTATATCAGCTTGTTTCTGGAAAAACAAAAGAGGAAGTTGCTATTGAATGCCAAAGTATGAGTTGGGGAGTATTTAAAGATCATTTGACGGACGCCTTGGTTGATCATCTGCATCCCATCCAGGTTCGCTACAAGGAAATCATCTCTGACTCAGCTTGTTTGGATAGAGTGCTGGAAGAAGGTGCAAATAAAGCCTCAGATATTGCAAATCCTACTCTCGATAATCTTTACCAGGCAATGGGATTCTTGAGAAGAAGGTAA 1032 42.05 RKRIVSGVQPTGSVHLGNYLGAIKNWIPLQNTYETLFFIVDLHAITLPYDREHLSSATRDTAAIYLACGVDTSKASVFVQSHVRAHAELMWLLSSSTPIGWLNKMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARVMSLTDGLAKMSKSASSDQSRINLLDSKDVIASKIKRCKTDSFPGLEFDNPDRPECNNLLSVYQLVSGKTKEEVAIECQSMSWGVFKDHLTDALVDHLHPIQVRYKEIISDSACLDRVLEEGANKASDIANPTLDNLYQAMGFLRRR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42832505 42840184 + Bda003093.1 Bda01g00942 942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00942 343 Hamap Tryptophan--tRNA ligase [trpS]. 1 340 IPR024109 GO:0004830
Bda01g00942 343 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 1 339 - -
Bda01g00942 343 SUPERFAMILY Nucleotidylyl transferase 3 339 - -
Bda01g00942 343 Coils Coil 342 343 - -
Bda01g00942 343 CDD TrpRS_core 3 291 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bda01g00942 343 PRINTS Tryptophanyl-tRNA synthetase signature 141 162 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bda01g00942 343 PRINTS Tryptophanyl-tRNA synthetase signature 14 30 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bda01g00942 343 PRINTS Tryptophanyl-tRNA synthetase signature 64 83 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bda01g00942 343 PRINTS Tryptophanyl-tRNA synthetase signature 206 216 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bda01g00942 343 Pfam tRNA synthetases class I (W and Y) 3 294 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda01g00942 343 PANTHER BNAA04G15180D PROTEIN 1 339 - -
Bda01g00942 343 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 10 19 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda01g00942 343 Gene3D - 199 309 - -
Bda01g00942 343 Gene3D HUPs 4 338 IPR014729 -
Bda01g00942 343 TIGRFAM trpS: tryptophan--tRNA ligase 2 339 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00942 K01867 WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] - oeu:111398676 605.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00942 Bda-Chr1:42832505 Bda04g01005 Bda-Chr4:60980715 2.15E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g9 . . . . . . . . . . Cma01g01442 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02321 Csa03g04541 Chy04g00162 . . . Bda01g00942 . . . . . . Cmo01g01496 . . . . . . Cpe02g00506 Bhi09g02566 Tan01g3920 . . . . . . . . . . . . . . . Cme04g00186
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004388 1 5 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 8 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00942 Bda_Chr01 FPKM 7.146767 7.583988 12.1169 10.965148 12.99666 13.882526 13.87322 18.003246 17.597857