Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00943 GCAGATATGGGATCATCCGACAGTTTGCAGCTAAAGGTCGTCCATGGCGACGGTGGTTATGTGCTCGAAGATGTCCCCCACCTTACCGATTACATAACTGATCTACCCACTTATCCAAACCCGTTGCAGTTTAATCCTGCTTATTCTGTAGTTAAGCAGTACTTTGTTGATGTTGACGACACAGTGTCACAACAGATTGTTGTCCACCCAGATAGTCCAAGAGGGGTACACTTTCGTCGTGCGGGGCCACGGCAGAAGGTGTATTTTGAATCCGATGAAGTTCGAGCCTGCATCGTCACTTGTGGCGGTTTGTGCCCTGGACTCAACACTGTCATTAGGGAAATTGTGTGTGGCCTTTATCACATGTATGGCATCAACAAGATCCTTGGTATAGATGGAGGATACAAAGGTTTTTATTCTCGAAATACGATTGGTTTAACCCCAAAGGTAGTCAATGACATTCATAAACGTGGTGGTACCATCCTTGGAACTTCTCGGGGAGGCCATGACACCTCTAAGATAGTCGATAGCATTCAGGATCGTGGGATTAATCAGGTTTATATAATAGGAGGTGATGGAACTCAGAAGGGAGCAGCTGTAATCTTTGAGGAAGTCAGACGCCGTGGCCTTAAAGTTGCCGTTGCTGGCATCCCTAAAACCATCGACAATGACATTCCGGTTATCGACAGGTCCTTTGGTTTTGATACTGCAGTGGAGGAGGCTCAACGGGCCATAAATGCAGCTCATGTTGAAGCAGAGAGTATCGAGAATGGTATTGGTCTTGTAAAATTGATGGGTCGTTACTGCGGTTTCATCGCAATGCATGCCACTCTGGCAAGCCGAGACGTGGACTGCTGTTTGATTCCGGAATCTCCTTTTTATTTGGAAGGAAAAGGAGGACTCTTCGAGTACATCGAGAAACGACTCAAAGAAAATGGACATATGGTTATTGTGATAGCCGAGGGAGCCGGACAAGAACTTCTTTCAGAGAGCTTGGAATCCATGAACCAAAAAGATGCTTCTGGGAATAAGCTGCTTCGAGATGTCGGGCTGTGGATGTCTCATAGGATCAAGGATCATTTTGCAAATCAACATAAGATGGTCATTAATCTTAAATATATAGATCCTACCTACATGATCCGTGCAATTCCGAGCAACGCATCTGACAATGTGTATTGCACACTCCTAGCTCAGAGTGCTGTTCATGGAGCTATGGCAGGGTACACAGGCTTCACAAGTGGGCTTGTTAATGGCAGACATACATATATTCCATTCAATCGCGTAATTGAGAAGCAAAACAAGGTTGTAATCACTGACCGGATGTGGGCGAGGCTCTTGTCTTCGACCAACCAGCCGAGCTTTCCGAACCCGAAAGATTTCAGAGAAGTTAAGGAAGAAAATGTGACTGAAGTTAAGGAGGAGGAAGAGGGGCCTTCCCAGTCAGATGACCAATAA 1455 45.77 ADMGSSDSLQLKVVHGDGGYVLEDVPHLTDYITDLPTYPNPLQFNPAYSVVKQYFVDVDDTVSQQIVVHPDSPRGVHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLYHMYGINKILGIDGGYKGFYSRNTIGLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIFEEVRRRGLKVAVAGIPKTIDNDIPVIDRSFGFDTAVEEAQRAINAAHVEAESIENGIGLVKLMGRYCGFIAMHATLASRDVDCCLIPESPFYLEGKGGLFEYIEKRLKENGHMVIVIAEGAGQELLSESLESMNQKDASGNKLLRDVGLWMSHRIKDHFANQHKMVINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAMAGYTGFTSGLVNGRHTYIPFNRVIEKQNKVVITDRMWARLLSSTNQPSFPNPKDFREVKEENVTEVKEEEEGPSQSDDQ 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42875120 42878596 + Bda003095.1 Bda01g00943 943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00943 484 Coils Coil 238 258 - -
Bda01g00943 484 MobiDBLite consensus disorder prediction 458 475 - -
Bda01g00943 484 Gene3D - 90 280 - -
Bda01g00943 484 Pfam Phosphofructokinase 97 402 IPR000023 GO:0003872|GO:0006096
Bda01g00943 484 MobiDBLite consensus disorder prediction 449 484 - -
Bda01g00943 484 PRINTS ATP-dependent phosphofructokinase family signature 98 117 IPR022953 GO:0003872|GO:0006002|GO:0006096
Bda01g00943 484 PRINTS ATP-dependent phosphofructokinase family signature 311 323 IPR022953 GO:0003872|GO:0006002|GO:0006096
Bda01g00943 484 PRINTS ATP-dependent phosphofructokinase family signature 254 270 IPR022953 GO:0003872|GO:0006002|GO:0006096
Bda01g00943 484 PRINTS ATP-dependent phosphofructokinase family signature 233 251 IPR022953 GO:0003872|GO:0006002|GO:0006096
Bda01g00943 484 PRINTS ATP-dependent phosphofructokinase family signature 182 198 IPR022953 GO:0003872|GO:0006002|GO:0006096
Bda01g00943 484 PRINTS ATP-dependent phosphofructokinase family signature 215 232 IPR022953 GO:0003872|GO:0006002|GO:0006096
Bda01g00943 484 PIRSF ATP_PFK_TP0108 13 459 IPR012004 GO:0003872|GO:0005524|GO:0006096
Bda01g00943 484 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 25 455 IPR012004 GO:0003872|GO:0005524|GO:0006096
Bda01g00943 484 PANTHER - 7 470 - -
Bda01g00943 484 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 7 470 - -
Bda01g00943 484 SUPERFAMILY Phosphofructokinase 28 461 IPR035966 GO:0003872|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00943 K00850 pfkA, PFK; 6-phosphofructokinase 1 [EC:2.7.1.11] - jre:109009465 851.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00943 Bda-Chr1:42875120 Bda14g01621 Bda-Chr14:41219835 0 dispersed
Bda01g00943 Bda-Chr1:42875120 Bda05g00194 Bda-Chr5:21978478 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g36 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g00943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000435 3 2 4 4 3 4 4 4 4 4 5 4 3 5 4 4 4 7 4 4 4 3 3 3 5 4 4 7 5 3 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00943 Bda_Chr01 FPKM 2.343115 2.441566 20.570866 20.946434 3.300132 3.752306 3.977188 0.824535 0.790102