Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00957 ATGGATCTCCACCTTGATCTCAATGCCCCTCACTCTATGGGAACTACTATCATTGGCGTCACCTACAATGGAGGTGTTGTTCTCGGAGCAGATTCTCGAACCAGCACTGGAGCATATGTGGCCAACCGTGCTTCAGACAAAATTACACAGTTGACAGACAATGTTTATGTCTGTCGCTCTGGCTCGGCTGCTGATTCTCAGATTGTTTCAGACTATGTGCGTTACTTCCTTCATCAACACACAATCCAGCTAGGGCAGCCCGCAACGGTAAAAGTAGCTGCTAATCTTGTCAGGCTATTGGCATACAATAACAAGAATATGTTACAAACTGGTCTCATTGTTGGTGGGTGGGATGAGTATGAAGGTGGTAAGATCTATGGAATTCCACTTGGTGGAACAGTCATTGAGCAGCCTTTTGCTATTGGAGGATCTGGATCCAGTTACCTTTATGGATTTTTTGATCAAGTGTGGAAAGAAGGGATGACCAAGGATGAAGCTGAGCAATTAGTGGTCAAAGCAGTTTCCCTCGCGATTGCACGAGATGGTGCCAGTGGGGGCGTTGTCCGAACTGTTATTATCAACTCTGACGGAGTGACGAGAAATGTCTATCCTGGCGATAAACTTCCCCTTTGGCACGAGGAGCTGGAGCCACATAATTCATTATTCGACATCCTCAACACTTCAACAAGTCCCGAGCCGATGAACATATAA 711 46.13 MDLHLDLNAPHSMGTTIIGVTYNGGVVLGADSRTSTGAYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLAYNNKNMLQTGLIVGGWDEYEGGKIYGIPLGGTVIEQPFAIGGSGSSYLYGFFDQVWKEGMTKDEAEQLVVKAVSLAIARDGASGGVVRTVIINSDGVTRNVYPGDKLPLWHEELEPHNSLFDILNTSTSPEPMNI 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43116448 43119879 - Bda003114.1 Bda01g00957 957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00957 236 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 10 216 IPR029055 -
Bda01g00957 236 CDD proteasome_beta_type_6 15 202 - -
Bda01g00957 236 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
Bda01g00957 236 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
Bda01g00957 236 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839|GO:0051603
Bda01g00957 236 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 7 229 - -
Bda01g00957 236 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 218 IPR029055 -
Bda01g00957 236 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bda01g00957 236 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bda01g00957 236 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bda01g00957 236 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bda01g00957 236 PANTHER PROTEASOME SUBUNIT BETA 7 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00957 K02738 PSMB6; 20S proteasome subunit beta 1 [EC:3.4.25.1] - jre:109009542 441.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00957 Bda-Chr1:43116448 Bda12g00110 Bda-Chr12:901410 1.17E-21 dispersed
Bda13g01635 Bda-Chr13:39835652 Bda01g00957 Bda-Chr1:43116448 3.17E-30 transposed
Bda01g00957 Bda-Chr1:43116448 Bda13g01307 Bda-Chr13:35293520 2.69E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g240 . . . . . . . . . Cmo12g00227 . . . . Sed08g1434 . . Bhi04g01115 Tan02g2596 Cmetu01g1445 . Hepe10g0330 . Lcy13g1369 . . . . . . . . . . Cone20ag0621 . . . Cme03g01712 . . Bda01g00957 . . . Bma01g01350 . . . . . Cma12g00273 . . . . . . . . . . . Cla08g01251 Cam08g1709 Cec08g1289 Cco08g1410 Clacu08g1406 . Cre08g1190 . Csa02g02304 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005086 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00957 Bda_Chr01 FPKM 9.991171 9.498879 19.639261 22.185244 16.250309 14.577253 15.746938 13.520935 12.099244