Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00961 ATGGATCGACAAGTCCTTGATTTTGCAGCTGCTTCAGCTATGGCATATGCACAGCAACAGCGACAAACGTCAGCTAATATGCAACAACCACAACCCTTTGGATTTCGCCCACAACATCAACAATTTCCTCCATCAGTTCATGGACCTCCTTTCCTTCCTCCACACCCTTCTATGCAACAATTCCCTTTTCATCAACCCTTGCAACAACTCCATCCTCATCATCCACCCCATCCTCACCTTCTTCATTTTCAGCAGCAACAGCAAGCACCGCCATCCTTCCCTCCCCATTTACCTTCTTCTGTGAGTCCACCTTTCCACGGACTATATGATTCTGCTCCTCCACCCCTAGTTCCTCCACCTCCAATTCCTCCCCCGTCAGATCCAGAGCTCCAAAAACGTATCGATAAACTTGTGGAGTACTCCTTAAAGAATGGTCCCGAATTTGAAGCGATGATCAGGGAGAAGCAGCAAGATAATCCTGCATACAGTTTTCTATTTGGTGGGGAAGGACATGGTTACTATCGTTATAAACTCTGGCTAACAAGTCATTCTCCCCCTGGCGGTGTATTCAATCCATCTTTTCCTCCATCATCCATATCCATGATGCATGCATCTTCAAACACTTTGATAAATCCACCACCTATGAATGCTCCAGCAGCTCCTGCTCTGGGGGTTCCTCCTATGCACCAATTTGCACAGTTCTATGAACAGCAGCCACATCATCAACATGCCTTTGGTGCTCATGGTCAAGCAGATTATGATCAGTCACTGAACTCTTTTAAAGGTCTTTCTGGACCACTTCCATCTGATGTTGCAAGTGAGCTCAATAATGTGATTAGCAATCTCACTGGTGCCAAAGAGTCAATTAAGGGTGCCAAAGCTTGGTTCATGCAGAGATCTCCTTTCGCTCCAGCTCTGGCTGAGGCACTTCGAGACCGAATTTTCGCGATAGATGATTCTGATAGGCAACTTCATATAATATATCTTGTCAATGACATTCTTTTTGAGAGCTTGCCAAGGAGAACCAAAACTCACGAGCTTGATAATGAAGCTCTTGCATTCAAACCTGTTTTAGGTCCTATGCTTGCTAGAGTTTACCACAATCCTAATATTAAGGAGGAAAATCAGTCAAAGTTACAAACACTTGTTCAGTTCTGGCTTTCCAGAGAGATTTATGATCAGGATACCATTAATGCCTTTGAGGGTGAAATCATGAATGGACCACCGGCCAATTCCTTCACAGGGATTCCAAAAGATTTCACCACTTCTGGAGATTCAGCTGCTGGATTACCATTATATTCAGCGAACCGCGATGTTCCTCACTGGCAGCCTGATAGGAAAACTTCTGTTCCAGGTTTATCTGCTCAAGAACACCCACACCCTGATAAACATGTGATCCCTGGCCAAGCTATGCCCCAATCCGTCCCACTCCAACCTTTTCTTCCAAACTCAGCCGCCGGCGGTGTGTATGCGGGGCCTATGCCCATACCATCTTCTATTCAACCGGCAAACCAGCAAGCTGCTCCGATCTTAATGGAGCGGATTCCGATCGAGGAAGTTTTCGAGCAGCTCAAGTGTACTAGAGAAGGTTTGACAGGCGATGAAGGGGAGAAGAGGCTCGGAATTTTCGGTCCCAACAAGCTTGAGGAGAAAAAGGAGAGTAAGCTTCTCAAGTTCTTGGGATTTATGTGGAATCCCCTTTCATGGGTCATGGAATGTGCAGCAATTATGGCGATTGTTCTTGCCAATGGAGGGGTATTGACGATTGCATTAGTACATTTATATCAATTTCTCGCCGGAGGGTTAACGAATTTTTTATTGACGCAGGGGAAGCCGCCGGACTGGCAAGACTTCGTCGGAATTGTGGTTCTGCTCATCATCAACTCAACTATCAGCTTCATCGAGGAGAACAATGCCGGCAATGCTGCAGCTGCTCTCATGGCCGGTCTTGCCCCGAAGACGAAGGTGTTGAGGGACGGAAAATGGACGGAGCAAGAAGCGGCGATTCTGGTTCCCGGAGATGTGATCAGCATCAAGCTCGGAGATATTGTACCGGTTTTGACGGCCATTGGTAACTTCTGTATCTGCTCTATTGCAATCGGAATGGCTATCGAGATCGTAGTGATGTTCCCGATCCAGCACAGACCTTATAGAGAGGGTATCGATAACCTGTTGGTGCTTCTCATCGGAGGTATTCCGATTGCCATGCCGACGGTCCTGTCTGTAACTATGGCTATCGGTTCCCATCGTCTCTCCCAACAGGGGGCCATTACAAAGAGAATGACAGCCATTGAAGAGATGGCCGGAATGGACGTTCTCTGCAGCGACAAAACCGGGACACTCACGCTCAACAAGCTTACGGTATTTGGGGAAGGTGTGGATAAAGATACCGTCGTCTTACTCGCTGCGAGGGCTTCAAGAGTTGAGAACCAGGACGCTATCGACGCCTCCATTGTTGGAATGTTGGGTGATCCTAAAGAGGCCCGAGCCGGAATCAATGAGGTGCATTTCCTGCCTTTCAATCCGGTGGATAAGCGGACGGCTATCACATACATCGACGGCGAAGGTAACTGGCACCGGAGCAGCAAGGGCGCTCCTGAGCAGATTATCGATCTCTGTGAACTCGCCGGAGAAGCGAGGAAGAAGGCTCATGCTGTGATTGACAACTATGCCGAACGCGGTCTTCGTTCTCTGGCTGTCGCTCAACAGACCGTATCGGAGAAGACGAAGGAGAGCCTGGGAGATAAATGGGAGTTCATTGGCCTCTTGCCCCTCTTTGACCCGCCAAGACATGATAGTGCAGAGACGATCCGACGGGCTCTTGAACTTGGTGTTAACGTTAAAATGATCACCGGTGACCAACTCGCTATCGGGAAAGAAACCGGACGTAGACTCGGCATGGGTACCAACATGTATCCGTCGTCCTCCCTTCTCGGCCAAAGCAAGGACGAGTCTATTGCCTCCATTCCCGTCGACGAGCTCATCGAGAAGGCTGATGGATTCGCCGGAGTTTTCCCCGAACACAAGTACGAAATCGTTAAGAAGTTGCAAGAGAGGAAACACATTTGTGGAATGACCGGAGATGGAGTCAACGACGCTCCGGCGTTGAAGAAGGCCGACATTGGAATTGCAGTGGCTGATGCGACGGACGCCGCAAGAAGCGCGTCGGATATTGTTCTGACGGAGCCGGGTCTGAGCGTGATCGTGAGCGCCGTTCTGACGAGCAGAGCCATCTTTCAGAGGATGAAAAACTATACAATTTACGCAGTTTCCATAACGATTCGTATCGTCTTGGGATTCATGCTCGTCGCTCTTCTCTGGCAGTTCGACTTTTCGCCGTTCATGGTTCTGATAATCGCCATCTTGAACGACGGAACTATCATGACCATCTCTAAGGACAGAGTGAAGCCATCTCCTCTTCCGGACTCATGGAAGCTCAAAGAAATCTTCGCCACCGGCGTCGTTCTCGGAACGTACATGGCCGTCATGACCGTCGTCTTCTTCTGGCTCGCAAACGAAACCGACTTCTTCTCGAAAGCTTTCGGTGTGAGGTCAATCAAGGGTAGCCTGACTGAGCTCAACTCTGCTCTTTACCTCCAAGTGAGCATCATCAGTCAAGCTCTCATCTTCGTCACACGGTCAAGGAGCTGGTCTTTCGTTGAACGCCCCGGCGTCTTGCTCGTCAGTGCCTTCGTTGCTGCACAGTTGGTTGCTACCCTAATTGCAGTATATGCAAGTTGGGGATTTGCTAGGATTGAAGGAATTGGATGGGGATGGGCAGGAGTGATCTGGATCTACAGCGTCGTTACCTACTTCCCTCTCGACGTCCTCAAGTTCATCATCCGCTACGCACTGAGTGGGAAGGCGTGGGACAATATGCTTCAGAACAAGACTGCATTCACAACAAAGAAGGATTATGGAAAGGGAGAGAGAGAAGCTCAATGGGCGTTGGCTCAACGGACACTTCACGGACTCCAGGCGCCGGAAGTTCATTTTCACGACAAGAACACCCACCTCGACCACTCAGACCTTGCCGACGAGGCCATGAGACGCGCTGAAGTTGCTAGGTTGAGGGAGCTTCATACGCTGAAGGGGCATGTCGAATCAGTGGTGAAGCTGAAGGGGCTGGACATTGAAACCATCCAACAGCATTACACAGTTTGA 4164 49.3 MDRQVLDFAAASAMAYAQQQRQTSANMQQPQPFGFRPQHQQFPPSVHGPPFLPPHPSMQQFPFHQPLQQLHPHHPPHPHLLHFQQQQQAPPSFPPHLPSSVSPPFHGLYDSAPPPLVPPPPIPPPSDPELQKRIDKLVEYSLKNGPEFEAMIREKQQDNPAYSFLFGGEGHGYYRYKLWLTSHSPPGGVFNPSFPPSSISMMHASSNTLINPPPMNAPAAPALGVPPMHQFAQFYEQQPHHQHAFGAHGQADYDQSLNSFKGLSGPLPSDVASELNNVISNLTGAKESIKGAKAWFMQRSPFAPALAEALRDRIFAIDDSDRQLHIIYLVNDILFESLPRRTKTHELDNEALAFKPVLGPMLARVYHNPNIKEENQSKLQTLVQFWLSREIYDQDTINAFEGEIMNGPPANSFTGIPKDFTTSGDSAAGLPLYSANRDVPHWQPDRKTSVPGLSAQEHPHPDKHVIPGQAMPQSVPLQPFLPNSAAGGVYAGPMPIPSSIQPANQQAAPILMERIPIEEVFEQLKCTREGLTGDEGEKRLGIFGPNKLEEKKESKLLKFLGFMWNPLSWVMECAAIMAIVLANGGVLTIALVHLYQFLAGGLTNFLLTQGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDVISIKLGDIVPVLTAIGNFCICSIAIGMAIEIVVMFPIQHRPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVFGEGVDKDTVVLLAARASRVENQDAIDASIVGMLGDPKEARAGINEVHFLPFNPVDKRTAITYIDGEGNWHRSSKGAPEQIIDLCELAGEARKKAHAVIDNYAERGLRSLAVAQQTVSEKTKESLGDKWEFIGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALLWQFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGTYMAVMTVVFFWLANETDFFSKAFGVRSIKGSLTELNSALYLQVSIISQALIFVTRSRSWSFVERPGVLLVSAFVAAQLVATLIAVYASWGFARIEGIGWGWAGVIWIYSVVTYFPLDVLKFIIRYALSGKAWDNMLQNKTAFTTKKDYGKGEREAQWALAQRTLHGLQAPEVHFHDKNTHLDHSDLADEAMRRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 1387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43192651 43200114 + Bda003121.1 Bda01g00961 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00961 1387 MobiDBLite consensus disorder prediction 438 459 - -
Bda01g00961 1387 Pfam CID domain 274 399 IPR006569 -
Bda01g00961 1387 SMART Cation_ATPase_N_a_2 511 583 IPR004014 -
Bda01g00961 1387 Gene3D - 271 407 IPR008942 -
Bda01g00961 1387 SMART 558neu5 274 405 IPR006569 -
Bda01g00961 1387 MobiDBLite consensus disorder prediction 20 130 - -
Bda01g00961 1387 ProSitePatterns E1-E2 ATPases phosphorylation site. 776 782 IPR018303 -
Bda01g00961 1387 CDD P-type_ATPase_H 530 1279 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bda01g00961 1387 PRINTS P-type cation-transporting ATPase superfamily signature 921 932 - -
Bda01g00961 1387 PRINTS P-type cation-transporting ATPase superfamily signature 1026 1045 - -
Bda01g00961 1387 PRINTS P-type cation-transporting ATPase superfamily signature 462 476 - -
Bda01g00961 1387 PRINTS P-type cation-transporting ATPase superfamily signature 943 953 - -
Bda01g00961 1387 PRINTS P-type cation-transporting ATPase superfamily signature 1049 1061 - -
Bda01g00961 1387 ProSiteProfiles CID domain profile. 267 408 IPR006569 -
Bda01g00961 1387 SUPERFAMILY HAD-like 770 1073 IPR036412 -
Bda01g00961 1387 PANTHER CALCIUM-TRANSPORTING ATPASE 686 1367 - -
Bda01g00961 1387 PANTHER CALCIUM-TRANSPORTING ATPASE 609 685 - -
Bda01g00961 1387 PANTHER PLASMA MEMBRANE ATPASE 686 1367 - -
Bda01g00961 1387 PANTHER PLASMA MEMBRANE ATPASE 609 685 - -
Bda01g00961 1387 PANTHER CALCIUM-TRANSPORTING ATPASE 507 585 - -
Bda01g00961 1387 SUPERFAMILY Calcium ATPase, transmembrane domain M 514 1285 IPR023298 -
Bda01g00961 1387 Pfam Surp module 134 179 IPR000061 GO:0003723|GO:0006396
Bda01g00961 1387 Pfam haloacid dehalogenase-like hydrolase 770 1040 - -
Bda01g00961 1387 MobiDBLite consensus disorder prediction 108 128 - -
Bda01g00961 1387 MobiDBLite consensus disorder prediction 43 60 - -
Bda01g00961 1387 SUPERFAMILY Surp module (SWAP domain) 112 179 IPR035967 GO:0003723|GO:0006396
Bda01g00961 1387 SMART surpneu2 131 183 IPR000061 GO:0003723|GO:0006396
Bda01g00961 1387 PRINTS H+-transporting ATPase (proton pump) signature 998 1014 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda01g00961 1387 PRINTS H+-transporting ATPase (proton pump) signature 883 901 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda01g00961 1387 PRINTS H+-transporting ATPase (proton pump) signature 1198 1219 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda01g00961 1387 PRINTS H+-transporting ATPase (proton pump) signature 1057 1082 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda01g00961 1387 PRINTS H+-transporting ATPase (proton pump) signature 1026 1042 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda01g00961 1387 Gene3D - 1337 1387 - -
Bda01g00961 1387 Gene3D - 686 1253 - -
Bda01g00961 1387 Gene3D - 771 1063 IPR023214 -
Bda01g00961 1387 SFLD C1.7: P-type atpase like 756 1078 - -
Bda01g00961 1387 Gene3D - 562 671 - -
Bda01g00961 1387 Gene3D Surp module 120 184 IPR035967 GO:0003723|GO:0006396
Bda01g00961 1387 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 1001 1110 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda01g00961 1387 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 686 1244 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bda01g00961 1387 MobiDBLite consensus disorder prediction 20 38 - -
Bda01g00961 1387 Gene3D - 786 926 IPR023299 GO:0000166
Bda01g00961 1387 Pfam Cation transporter/ATPase, N-terminus 515 577 IPR004014 -
Bda01g00961 1387 ProSiteProfiles SURP motif repeat profile. 133 177 IPR000061 GO:0003723|GO:0006396
Bda01g00961 1387 SFLD p-type atpase 756 1078 IPR044492 -
Bda01g00961 1387 PANTHER PLASMA MEMBRANE ATPASE 507 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00961 Bda-Chr1:43192651 Bda11g01685 Bda-Chr11:50986235 0 dispersed
Bda03g00836 Bda-Chr3:7157978 Bda01g00961 Bda-Chr1:43192651 9.07E-55 dispersed
Bda01g00961 Bda-Chr1:43192651 Bda02g00275 Bda-Chr2:41226892 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00961 K01535 - csv:101214655 1316.98