Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00978 ATGCCTGTAAAAGCAGCACAATCGTCATATAGGGATCGAACACAAGAATTCCAGACTGTTGCAGAGAGGCTGAAGAAGTCTTTCTCATCATCTTCTGAGCAAAATGGGCAGAGTAATGGTTTGAAATTAGAGGATCAGCGATCCGCAGTTGCAATTCAGTCTGAATTTAATAAGAGAGCTTCCAAAATTGGGTATGGAATACACCAGACATCGCAAAAACTTTCAAAGCTGGCTAAGTTGGCAAAGAGGACCTCAGTTTTTGATGATCCCACCGTGGAAATTCAGGAATTGACAGCTGTTATCAAGCAAGATATTACTGCACTGAACTCTGCAGTCGTTGACCTTCAGCTGCTTTCCCATTCCAGAAATGGTAGTGGGAATGTCTCCAGTGATACAACTAGTCATTCAACCACTGTTGTAGATGACCTGAAGAATCGGTTAATGAGTGCTACAAAAGAATTCAAAGAAGTCCTCACCATGCGAACAGAGAACTTGAAAGTTCATGAAAACAGAAGACAACTGTTTTCTTCCACCGCTTCCAAAGATTCTGCCAATCCTTTTGTTCGTCAGCGCCCATTAGTTTCCAGGTCAGCAGCTAGCACATCAAATGCTCCACCTCCTCCTCCATGGGCAAATGGATCAACATCCTCGTCCCAGTCATTTAATAGAAAGCAGGCAGACGGGGAGAGTCAGCCACTACTCCAACAGAAGCAGCAACAGCAACAGCAGTTGGTTCCATTGCAGGACAGTTACATGCAGAGCAGGGCTGAAGCTCTGCAAAATGTTGAGTCCACAATTCATGAGCTGAGCAGCATTTTCAACCAGCTCGCAACCCTTGTTTCCCAACAAGGAGAAATTGCCATAAGGATTGATGAGAACATGGATGACACTTTGGCAAATGTAGAGGGAGCACAGGGAGCTCTTCTCAAGTATTTAAACAGCATATCTTCGAATAGGTGGCTGATGATAAAAATATTCTTCGTGTTAATATTTTTCCTCATGGTTTTCCTATTTTTCGTGGCATAG 1026 43.47 MPVKAAQSSYRDRTQEFQTVAERLKKSFSSSSEQNGQSNGLKLEDQRSAVAIQSEFNKRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTVEIQELTAVIKQDITALNSAVVDLQLLSHSRNGSGNVSSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHENRRQLFSSTASKDSANPFVRQRPLVSRSAASTSNAPPPPPWANGSTSSSQSFNRKQADGESQPLLQQKQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43390432 43392596 + Bda003136.1 Bda01g00978 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00978 341 MobiDBLite consensus disorder prediction 213 239 - -
Bda01g00978 341 CDD SNARE_syntaxin5 252 330 - -
Bda01g00978 341 PANTHER SYNTAXIN 2 340 IPR045242 -
Bda01g00978 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Bda01g00978 341 SUPERFAMILY t-snare proteins 54 304 IPR010989 GO:0016020|GO:0016192
Bda01g00978 341 Pfam SNARE domain 285 337 IPR000727 -
Bda01g00978 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Bda01g00978 341 MobiDBLite consensus disorder prediction 194 239 - -
Bda01g00978 341 PANTHER SYNTAXIN-32-LIKE 2 340 - -
Bda01g00978 341 Gene3D - 50 304 - -
Bda01g00978 341 SMART tSNARE_6 244 311 IPR000727 -
Bda01g00978 341 MobiDBLite consensus disorder prediction 24 44 - -
Bda01g00978 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00978 Bda-Chr1:43390432 Bda14g00262 Bda-Chr14:1802621 6.65E-101 dispersed
Bda01g00978 Bda-Chr1:43390432 Bda13g01286 Bda-Chr13:35174025 2.92E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00978 K08490 - jre:109009619 465.692