Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00979 ATGGATGTTCCCCCCTTGGAACAAAGTGAAACGGAAACTTACCCTTTAATAATGGAAAGATCAGAAAATCTTAACAACACTGAACACATTGTGGACATATTAGATGCTGGTGATACTTCATCATCCAGCTTGTCTCATGATCGACAGTACACTGGGTCAAATGCATCACAGATTGAAGATAGACCTTCAAGCAGTACACGAGTGCCTACTTCTGAACCACCAATTGCTCTTAATGGATCAAACTCTCGGAATTCCTCGTTCATTAGGAGAGGGAACACACATCGTCGTCAGAGTCCATTGAATTCCAGTTTATGGATATCTATTGAACTTGTTCTTACTCTAAGTCAGATTGTTTCAGCTGTAGTTGTTTTGTCATTATCGAGGCATGAGCATCCACGTGCCCCGTTGTTTCAGTGGATTGTGGGATACGCATCTGGTTGTGTTGCTACCCTCCCTCTTCTCTACTGGCGCTATAGACATCGTAACCAGGCTTTAGAGCAGGATTCATCTCAATCTCGCCAGAATTCTACTCAAGTTTCTCTTTCAGCTTCTAGGACATCAGAATGGGAAGATCGCCAAACCGCTGCCTCTCCTCCTACTAGCAATCAAAGTTCTGGTGCACTTAGTGCGAGGCTGAAGATATGGGTAGAATATTTTAAGATGGGCTTGGATTGTTTTTTTGCTGTTTGGTTTGTAGTTGGCAATGTGTGGATCTTTGGAGGGCACTCGTCAGCCTCTGAGTCTCCTAACTTGTACAGGTTATGTATAGTTTTTCTTACCTTTAGCTGTATTGGATATGCAATGCCCTTCATTCTATGCGTGACCATATGCTGTTGTCTGCCCTGTATAATTTCCATCCTTGGGTTTAGAGAAGATCTGTCACAAACTAGGGGTGCCACTACTGAATCAATTGATGCTTTGCCTACATACAAGTTCAAGGTGAAGAAAAGTAAAAGTGGGGATGAAAACAACTCAGGTGGTGGTGAAGGTGGGATTGTGGCTGCTGGAACGGAAAAGGAACGCGTTATTTCTGGCGAAGATGCTGTTTGTTGCATCTGCCTGGCTAAATACTCCAACAATGATGAATTGAGAGAGTTGCCATGTTCTCACTTCTTTCACAAGGATTGTGTGGATAAATGGCTGAAGATCAACGCTTTATGCCCTCTCTGCAAGACGGAGGTTGGTGAGAGCATCTTAGGCTCACTCAACGGCTCAAGCGCTAACCACCGCCAAGGCGATAATAGCGCTGCAACCACCTTGACCCTGTTTTAA 1272 44.1 MDVPPLEQSETETYPLIMERSENLNNTEHIVDILDAGDTSSSSLSHDRQYTGSNASQIEDRPSSSTRVPTSEPPIALNGSNSRNSSFIRRGNTHRRQSPLNSSLWISIELVLTLSQIVSAVVVLSLSRHEHPRAPLFQWIVGYASGCVATLPLLYWRYRHRNQALEQDSSQSRQNSTQVSLSASRTSEWEDRQTAASPPTSNQSSGALSARLKIWVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASESPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLSQTRGATTESIDALPTYKFKVKKSKSGDENNSGGGEGGIVAAGTEKERVISGEDAVCCICLAKYSNNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESILGSLNGSSANHRQGDNSAATTLTLF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43419273 43421813 - Bda003138.1 Bda01g00979 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00979 423 SUPERFAMILY RING/U-box 342 397 - -
Bda01g00979 423 CDD RING-H2_RNF111_like 349 391 - -
Bda01g00979 423 Pfam Ring finger domain 350 391 IPR001841 -
Bda01g00979 423 ProSiteProfiles Zinc finger RING-type profile. 350 391 IPR001841 -
Bda01g00979 423 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 411 - -
Bda01g00979 423 MobiDBLite consensus disorder prediction 167 205 - -
Bda01g00979 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 398 IPR013083 -
Bda01g00979 423 SMART ring_2 350 390 IPR001841 -
Bda01g00979 423 SMART ringv_2 349 391 IPR011016 GO:0008270
Bda01g00979 423 MobiDBLite consensus disorder prediction 37 97 - -
Bda01g00979 423 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00979 Bda-Chr1:43419273 Bda13g00332 Bda-Chr13:4176181 2.66E-51 dispersed
Bda10g00800 Bda-Chr10:42360855 Bda01g00979 Bda-Chr1:43419273 2.49E-99 transposed
Bda14g00139 Bda-Chr14:967873 Bda01g00979 Bda-Chr1:43419273 5.08E-12 transposed
Bda01g00979 Bda-Chr1:43419273 Bda13g01283 Bda-Chr13:35146003 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00979 - - csv:101211818 613.994