Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00984 ATGGGTTCTTGCGAAAAACGAAAACAAAAGAAAGAGAATTGTTTGTGGGTGAATGGGCCGATAATTGTAGGTGCGGGACCATCAGGGCTTGCGGCTTCCGCTTGTCTTTCTAAACATGGAGTTCCTTCCTTGATTCTCGAGCAAAGCGACTGTGTGGCTTCTTTGTGGCAACACAAAACCTACGATCGCTTAAAGCTTCATCTTCCCAAGCATTTCTGCGAGCTACCATTAATGGGTTTCCCTAAAAATTTCCCAAAGTACCCAACAAAGGGCCAGTTCATCTCCTACATGGAATCATACGCTGCGCACTTCTCGATTCACCCTAGACTCAACGAAACAGTTCAATTCGCGGAGTTTGATTCGAGCGGATTTTGGAGAGTCCGTACTCAGAAGTTTGAGTACATTTCTCGGTGGCTCATCGTCGCCTCCGGCGAGAATGCCGAGATGGTGAAGCCGGAAATTGCGGGGATGGAGAATTTTCGTGGAGCTGTGATTCATACCAGTATGTATAAATCAGGTTCCGATTTAAAAAACAAGAGGGTCTTAGTAATTGGGTGTGGCAATTCCGGCATGGAAGTTAGTTTGGACCTTTGCAGACACAATGCTGCTCCCCATATGGTCGTAAGAAACACTGTGCATGTTCTTCCGAGAGAAATGTTTGGTTTCTCAACGTTCGGAATCGCCACGAGACTCCTAAAATGGCTGCCACTAAGATTAGTAGACAAGTTTCTCCTTCTTGCTGCCTATCTCTTTCTCGGAGACACAGATCAGCTAGGCCTGCGGCGGCCAAAAACAGGCCCGATCGAACTAAAAAACGCCACCGGGAAAACACCAGTTCTCGACGTCGGAGCGCTCTCGCAGATAAAATCCGGGAAAATAAAGGTGATGGAAGAAGTTAAGGAAATCACCAGAAATGGAGCTAAATTTGTGGATGGGCAAGAGAAGGAATTCGATTCCATAATCTTAGCTACCGGCTACAGAAGCAATGTTCCCAAGTGGCTCAAGACACAACTAATTAAAGCAAGGGAACAACAACAACAACAACACCCACAGCACCAACAACTTCAACAATCTCCACATCAGCAGCAGCAGCAACAGTACATGCAAATGCAACAGCTCTTGTTACAGAGACAACAACAGCAGCAGGAGCAGCAGCAACAAACACAGGCCCAACAGCAGCAGCAAAGAGATGGAGCTCACCTCTTAAATGGAAATTCCAATGGGCTGGTGGGAAATGATCCTCATTTACGACAAATCCCTGTAACTGCAAATGCTTTGGCTACAAAGATGTACGAGGAAAGACTGAAACTGCCTCCTCAGAGAGACTCTCTTGATGAAGCAACTATAAAGCAACGATATGGTGAGAATGTGGGGCAGCTATCAGATCCAAATCACGGTGCACAGTGGCCAGTCATCAGGGTGTGTTCTCCTAATGGTTACATACAGTTGCAAGTTTTACATGGGGCTGCTGGGGAAATGTCTTCTCAGGTTCAAGCTCGGGGTCGGCAATTGTCCGGTTCCACACCGGACATAAGAAGTGAGATCAACCCAGTATTGAATCCAAGAGCGGCAGGTCCAGAGGGATCATTGATGGGTGTAAATGCTAAAATACTAGCATTAATATTTAGAAAATTCTATATGGCAAATATGAAGCTTCGATCCGTGCTTCTTCAGCAACAAAAACCTTTCATACAATCTCCTCAGCAATTTCATCAAATCCAGATGTTGGCACCTCAACAGCAACAGTTCATGCTTGCACAGCAAAATTTAACTTCTCCAAAGGATGGGCTGTTAAATTCTGTCGGTGATGTGGTTGCCAACGTCAGATCTCCTCTGCAAGTTGGTGGTTTTCTGTTGCTCCGTGTAGATACCGATGTTCTCTATAAGTTAAAAATGGCCCAAATACAACAGCAGCAGCAACAGAGCAATAACGTTCCAAGAAACCACACTGGGAGAAAGAGAAAGCAGCCGATGTCATCTTCGGGTCCTGCCAATAGCTCAGGAACAGCAAACACAGCTGGCCATTCCCCAAGTTCAGCGCCTTCAACGCCTTCAAGTCATACCCCTGGAGACGTGATCTCCATGCCTCCTATGTCTCAGAATGGTGGTTCTTCCAAGCTGATGATGTTTGGTGCTGATAATCCAAACACTTTTACATCACCATCAAATCATTGGGATGATAAAGATCTTGAATTGCAGGCTGACATGGATTTTGTAGAAGATGGATCTCTCGATGATAATGGCGAGTCTTTTTTATCCCATGATGATAGAGATCTTAGAGATTCAGTCGGTCGAGATACGAGCAAAGGTTTCACGTTCATTGAAGTAAATTCAGTGAGAGCAAGCTCAAGTAAAGTTTCCTGTTGCCACTTTTCTTCTGATGGAAAATTGCTAGCTAGTGGTGGACATGATAAAAAGGCTGTATTGTGGTATACAGAAAATTTAAAGCCAAAAAATTCGCTCGAAGGACATTCATCCATGATCACAGAAGTTCGTTTCAGTCCAAGCATGCCTCGTCTTGCTACGTCTTCGTTCGATAAAACTGTCAGGGTTTGGGATACTGAGAATCCTTGTTCCTCACTCAGGACTTTTACTGGTCATTCTTCCCCTGTAATGTCTGTAGACTTCCACCCAATCAAAGATGATCTCATCTGCTCTTGCGATGGAGACGGGGAGATACGATACTGGAGTGGTGGTACAGGTCAGATGAGATTTCAACCCCGTCTTGGCCGTTTTCTTGCCTATGCTGTCGATAATATCGTATTTATTCTAGACGGGGAGGCACTAGTCTGTCGCCATTCTTTGCAGGGACATTCTAAGACGATCCTTTCAGTCTCGTGGGACTCCTCCGGAGAGTATCTTGCTTCGGTTAGCGAGGATTCTGTCCGAGTTTGGACACTTGTCTCGGGAACTGAAGGAGAGTGCATTCACGAATTGAAGTGTAATGGCAATAAGTTCCATTCTTGTGTTTTCCACCCAACCTTTACGTCGCTGCTTGTAATTGGTTGCTATAAGGCGAATTTATTGATGATCTTACAATTTTTGTACAATGATGGACAATTTGTGCAGTCATTGGAGCTATGGAACATGTCAGAGAATAAAACCATGACTCTTTCGGCTCACGACGGATTGATTGCTTCTCTAGCCGTGTCAACGATGACAGGTTTTGTTGCTTCGGCGAGCCACGACAAATTTGTCAAGCTGTGGAAATGA 3213 45.1 MGSCEKRKQKKENCLWVNGPIIVGAGPSGLAASACLSKHGVPSLILEQSDCVASLWQHKTYDRLKLHLPKHFCELPLMGFPKNFPKYPTKGQFISYMESYAAHFSIHPRLNETVQFAEFDSSGFWRVRTQKFEYISRWLIVASGENAEMVKPEIAGMENFRGAVIHTSMYKSGSDLKNKRVLVIGCGNSGMEVSLDLCRHNAAPHMVVRNTVHVLPREMFGFSTFGIATRLLKWLPLRLVDKFLLLAAYLFLGDTDQLGLRRPKTGPIELKNATGKTPVLDVGALSQIKSGKIKVMEEVKEITRNGAKFVDGQEKEFDSIILATGYRSNVPKWLKTQLIKAREQQQQQHPQHQQLQQSPHQQQQQQYMQMQQLLLQRQQQQQEQQQQTQAQQQQQRDGAHLLNGNSNGLVGNDPHLRQIPVTANALATKMYEERLKLPPQRDSLDEATIKQRYGENVGQLSDPNHGAQWPVIRVCSPNGYIQLQVLHGAAGEMSSQVQARGRQLSGSTPDIRSEINPVLNPRAAGPEGSLMGVNAKILALIFRKFYMANMKLRSVLLQQQKPFIQSPQQFHQIQMLAPQQQQFMLAQQNLTSPKDGLLNSVGDVVANVRSPLQVGGFLLLRVDTDVLYKLKMAQIQQQQQQSNNVPRNHTGRKRKQPMSSSGPANSSGTANTAGHSPSSAPSTPSSHTPGDVISMPPMSQNGGSSKLMMFGADNPNTFTSPSNHWDDKDLELQADMDFVEDGSLDDNGESFLSHDDRDLRDSVGRDTSKGFTFIEVNSVRASSSKVSCCHFSSDGKLLASGGHDKKAVLWYTENLKPKNSLEGHSSMITEVRFSPSMPRLATSSFDKTVRVWDTENPCSSLRTFTGHSSPVMSVDFHPIKDDLICSCDGDGEIRYWSGGTGQMRFQPRLGRFLAYAVDNIVFILDGEALVCRHSLQGHSKTILSVSWDSSGEYLASVSEDSVRVWTLVSGTEGECIHELKCNGNKFHSCVFHPTFTSLLVIGCYKANLLMILQFLYNDGQFVQSLELWNMSENKTMTLSAHDGLIASLAVSTMTGFVASASHDKFVKLWK 1070
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43453870 43464753 - Bda003144.1 Bda01g00984 984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00984 1070 Gene3D - 766 902 IPR015943 GO:0005515
Bda01g00984 1070 MobiDBLite consensus disorder prediction 385 416 - -
Bda01g00984 1070 SUPERFAMILY FAD/NAD(P)-binding domain 178 352 IPR036188 -
Bda01g00984 1070 MobiDBLite consensus disorder prediction 341 364 - -
Bda01g00984 1070 Pfam Pyridine nucleotide-disulphide oxidoreductase 21 211 - -
Bda01g00984 1070 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Bda01g00984 1070 MobiDBLite consensus disorder prediction 385 412 - -
Bda01g00984 1070 PRINTS FAD-dependent pyridine nucleotide reductase signature 20 39 - -
Bda01g00984 1070 PRINTS FAD-dependent pyridine nucleotide reductase signature 180 198 - -
Bda01g00984 1070 ProSitePatterns Trp-Asp (WD) repeats signature. 840 854 IPR019775 -
Bda01g00984 1070 Gene3D - 20 398 IPR036188 -
Bda01g00984 1070 CDD WD40 775 1070 - -
Bda01g00984 1070 ProSiteProfiles Trp-Asp (WD) repeats profile. 821 856 IPR001680 GO:0005515
Bda01g00984 1070 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 332 638 - -
Bda01g00984 1070 PRINTS Pyridine nucleotide disulphide reductase class-II signature 176 200 - -
Bda01g00984 1070 PRINTS Pyridine nucleotide disulphide reductase class-II signature 19 41 - -
Bda01g00984 1070 PRINTS Pyridine nucleotide disulphide reductase class-II signature 137 145 - -
Bda01g00984 1070 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1038 1070 - -
Bda01g00984 1070 MobiDBLite consensus disorder prediction 655 720 - -
Bda01g00984 1070 SUPERFAMILY FAD/NAD(P)-binding domain 21 276 IPR036188 -
Bda01g00984 1070 MobiDBLite consensus disorder prediction 742 764 - -
Bda01g00984 1070 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 820 IPR001680 GO:0005515
Bda01g00984 1070 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 864 897 - -
Bda01g00984 1070 Gene3D - 903 1070 IPR015943 GO:0005515
Bda01g00984 1070 SUPERFAMILY WD40 repeat-like 774 1070 IPR036322 GO:0005515
Bda01g00984 1070 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 643 1070 - -
Bda01g00984 1070 ProSiteProfiles Trp-Asp (WD) repeats profile. 935 967 IPR001680 GO:0005515
Bda01g00984 1070 ProSiteProfiles Trp-Asp (WD) repeats profile. 864 897 IPR001680 GO:0005515
Bda01g00984 1070 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 821 856 - -
Bda01g00984 1070 Pfam WD domain, G-beta repeat 1033 1070 IPR001680 GO:0005515
Bda01g00984 1070 Pfam WD domain, G-beta repeat 780 810 IPR001680 GO:0005515
Bda01g00984 1070 Pfam WD domain, G-beta repeat 860 897 IPR001680 GO:0005515
Bda01g00984 1070 Pfam WD domain, G-beta repeat 817 853 IPR001680 GO:0005515
Bda01g00984 1070 Pfam WD domain, G-beta repeat 931 965 IPR001680 GO:0005515
Bda01g00984 1070 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 643 1070 IPR044716 GO:0003714
Bda01g00984 1070 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 332 638 IPR044716 GO:0003714
Bda01g00984 1070 Coils Coil 370 396 - -
Bda01g00984 1070 MobiDBLite consensus disorder prediction 636 720 - -
Bda01g00984 1070 ProSiteProfiles Trp-Asp (WD) repeats profile. 1038 1070 IPR001680 GO:0005515
Bda01g00984 1070 SMART WD40_4 928 966 IPR001680 GO:0005515
Bda01g00984 1070 SMART WD40_4 972 1012 IPR001680 GO:0005515
Bda01g00984 1070 SMART WD40_4 857 897 IPR001680 GO:0005515
Bda01g00984 1070 SMART WD40_4 772 811 IPR001680 GO:0005515
Bda01g00984 1070 SMART WD40_4 1031 1070 IPR001680 GO:0005515
Bda01g00984 1070 SMART WD40_4 814 853 IPR001680 GO:0005515
Bda01g00984 1070 MobiDBLite consensus disorder prediction 747 764 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00984 - - - jcu:105639257 890.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00984 Bda-Chr1:43453870 Bda13g01277 Bda-Chr13:35120063 0 dispersed
Bda12g00692 Bda-Chr12:33530741 Bda01g00984 Bda-Chr1:43453870 3.45E-135 dispersed
Bda12g00718 Bda-Chr12:34188608 Bda01g00984 Bda-Chr1:43453870 4.40E-120 dispersed
Bda01g00984 Bda-Chr1:43453870 Bda13g01276 Bda-Chr13:35115512 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g428 . . . . . . . . . . . . . . . . . Bhi04g01021 Tan02g2683 . . . . . . . . . . . . . . . . . . . . . . Bda01g00984 . Bpe14g00568 . . . . . . . . . Car05g00599 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00984 Bda_Chr01 FPKM 0.918946 1.812203 3.009809 0.0 0.0 2.235029 2.623429 3.283455 4.52437