Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00992 ATGTCTGCTTCCTCTGCCTCTGTCGCTGGTATTGCATTTTCTGGAAATTCTGTCAACTCACTCCAAATAACCTTCCTTTATCTTGCAAATGTCTCAGGCTATTTACCGAACGGGAATTTCGAGATTAGTCCCAAACCGTCGGATCTGCACGGGACTGTGGTGCAAGGGCGATACGCCATACCCAACTGGGAAATCTCCGGATTCGTCGAGTACATTAAATCCGGCCAAAAACAAGGGGACATGTTGCTTGTGGTGCCGGAGGGAGCCTACGCCGTCCGGCTAGGCAACGAGGCTTCGATCAAGCAGGTTCTGAGAGCGATCAAGGGAATTTACTACTCCATTACGTTTAGCGCTGCGCGCACTTGCGCACAGGAAGAGCGATTGAACATATCAGTGGCGCCTGATTGGGGAGTTCTGCCGATGCAGACTCTGTACAGCAGTAATGGGTGGGACTCTTACGCCTGGGCCTTCCAAGCTGAGCAAGTGGAGATCGCGATCATCATTCATAATCCGGGCGTCGAAGAAGATCCCGCTTGTGGCCCTTTGATTGACTCTGTTGCCATCAAAGTTTTGTATCCTCCCAGACCCAGTCGCACTAATCTTATCAAGAACCCGAGTTTCGAAGAAGGTCCGTATCTGTTTCCAAACACTTCCTGGGGAGTTTTGATCCCTCCAAACATCGAAGACGATCACTCTCCTTTACCCGGTTGGATGGTGGAGTCGCTCAAAGCCGTCAAATACATCGACTCGGAGCACTTCTCCGTCCCGGACGGCAAGCGAGCGGTGGAGCTCGTTGCCGGAAAAGAAAGCGCCATTGCTCAAGTAGTTCGAACCATACCCGGAAAAACTTACGTTCTGACGTTTGCAGTGGGCGACGCGAGCAATTCCTGCGAAGGGTCCATGATTGTGGAAGCATTTGCCGGAAGAGAAACCGTTAAAGTCCCTTATGAATCGAAGGGAAAAGGTGGGTACAAACGTGCTGTCATGAGATTCGTCGCTATCTCTACCCGGACGCGTATAATGTTTCTGAGCACCTTCTACACCATGAGGAGTGACGACTTCTCGTCTCTCTGCGGGCCCGTCGTCGACGATGTGAAGCTCGTCAGTCTGCGTAGGCCATCCCCGCCTGTAGATGACCGGATTTGA 1146 51.83 MSASSASVAGIAFSGNSVNSLQITFLYLANVSGYLPNGNFEISPKPSDLHGTVVQGRYAIPNWEISGFVEYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQVLRAIKGIYYSITFSAARTCAQEERLNISVAPDWGVLPMQTLYSSNGWDSYAWAFQAEQVEIAIIIHNPGVEEDPACGPLIDSVAIKVLYPPRPSRTNLIKNPSFEEGPYLFPNTSWGVLIPPNIEDDHSPLPGWMVESLKAVKYIDSEHFSVPDGKRAVELVAGKESAIAQVVRTIPGKTYVLTFAVGDASNSCEGSMIVEAFAGRETVKVPYESKGKGGYKRAVMRFVAISTRTRIMFLSTFYTMRSDDFSSLCGPVVDDVKLVSLRRPSPPVDDRI 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43544237 43545472 + Bda003152.1 Bda01g00992 992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00992 381 PANTHER OS02G0527500 PROTEIN-RELATED 27 373 - -
Bda01g00992 381 Pfam Protein of unknown function (DUF642) 200 367 IPR006946 -
Bda01g00992 381 Pfam Protein of unknown function (DUF642) 33 189 IPR006946 -
Bda01g00992 381 PANTHER PLANT/F18G18-200 PROTEIN 27 373 - -
Bda01g00992 381 Gene3D - 196 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00992 - - - jre:109001808 622.854
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00729 Bda01g00992 CCT
Bda01g00992 Bda01g00729 ECH
Bda01g00729 Bda01g00992 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00992 Bda-Chr1:43544237 Bda05g00193 Bda-Chr5:21811784 1.85E-148 dispersed
Bda01g01318 Bda-Chr1:48610094 Bda01g00992 Bda-Chr1:43544237 1.24E-44 transposed
Bda01g00729 Bda-Chr1:34614426 Bda01g00992 Bda-Chr1:43544237 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g438 Blo01g01373 . Bda01g00729 . Bpe02g01237 . . . Cmo05g00416 . . . . Car12g00302 Sed01g1353 . . Bhi04g01003 Tan02g2698 Cmetu03g1011 . Hepe10g0273 . Lcy13g1759 . . . . . . . . . . . . . . Cme03g01646 . . Bda01g00992 . . . Bma01g01286 . . . . . . . Car05g00339 . . . . . . . . . Cla08g01309 Cam08g1769 Cec08g1350 Cco08g1471 Clacu08g1465 . Cre08g1252 Lsi08g01173 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004712 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 5 0 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00992 Bda_Chr01 FPKM 13.985177 12.582964 12.424742 14.695057 9.354774 9.915061 11.594821 14.982317 13.883498