Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00993 ATGACAAAGAAGAAGAACCCTTTGGTTTTTATGGATGTATCAATTGATGGGGATCCAATTGAGAGAATGATTTTTGAGCTTTTCTATGATGTCGCACCCAAGACAGCTGAAAACTTCCGTGCTCTTTGTACAGGAGAGAAAGGAATTGGCCCTAAAACTGGAAAACCACTGCACTACAAGGGATCTTTCTTCCATCGTATTGTCAAAGGCTCTATGGCACAGTATTTCTATAGGTTGTGTACCTCTCTATGTATTGTTAAACTTGTTTTTGTTTGCACTTTAACTGGTGGTTATGGCAATGATTTCCCAGATGAATTACCTCGATTAAAGCATGACGAAGCAGGTCTTCTATCCATGTTGGTGGCTGACCGTGACAATTTAGGTTCTCATTTTCTTGTTACCTTTAAAGCTTGTCACAATCTAGACAGGAAATGTGTGGTATTTGGAAAACTGGTTCAAGGATTTGATGTTTTAAAGAAGATTGAAGTTGTTGGTGACGAAGATGGTTGTCCAACTGTGACGGTCAAAATTATTAACTGTGGTGATTATACCGAAGATAAAAAGAGAAACAGCAAAAGCAGAACAAGGAAGGATGCATCTTCCCAAGATGATGAAGTAATTAGAAAGAGAAAGCAGAAGAAATCATCTAGAGATAAGAGGAGGAGGAGAAAATACTACACATCTGAATCAGAGAGTTCTTCTGATACTGAGATTGAATCTTCTGAGTCTGAGAGTGATTCAGATTCAGATTTTTCATTGTCATCAGATGATACTTCGTCAAGTGATTATAGGCCTAAGAAGCGAAAGAGATCTTCTAAGAAAGACAGATACCGGCATGGTAGAAGAAAGGATAAAAAACGTGAGAAAAAGAGGCGGCAGCGTGATAAGCGATCCAAGAGGAGATCCAAAAGGGCATTGGATAGTCTTACAGATTCTGAGAGTGAGAACAAAGGTGAAAGTAGCTTAGCTAGTGACGGTGTAGATGCTCATGGGAAAGATGAGAAGCGTGAAGAATCCTTAGTCAAAGCTCCCAAGGATAGTGTATCCCCAGTCCTAAATGTTCATCATAAGAGGAAAGATGGAGCAGATTCAGTTGTAAATGATGATGGGAGAACTCCCCTGGAGAATGGAGATCAAAGGAGCAATGGAATTTCTGCATTGGATTCGGACAGAAAAATGGAAAGACAACCTGACGTAGTAGATGATCATCCAGGAAAATCTAGCAGGAGCCGAAGCTTGAGTCCTAAGAGGACCATGAGTAAAAGTATGAGTATTAGTCCCAGGAAGAGTTTCAGCAAAAGCCCAAGTGTGAGTCCAAAACAAAGTATGAGCAGGAGTAGGAGTGTGAGTAGAAGTCCACTTGTGCCACTGAGAAACAGGAATGTGAGCAAAAGCCCTATTAGAAGCGATAGCAGTAGGAGCCCTGTCAGAAGTATCAGCAGAAGTCCTTCTGAGGATCGGAAAGGTCGAGGCAGTCGTAGGAGCCCACCAAGAGCTAGGTCTTTAAGAAGCATTAGCAGGAGCCCTGCAAATCTCAGCAGGAGTCCACCTAGAAAAGTTGTAAGAAAATCAGTTAGCATAAGCCCAGCTAGAAGAAGTTTAAGTGGAAGTCCAGTGAGATCTGCTCAAAAGAGTGTCAGCAGAAGCTCAGGCAGGTTACCGCCTTCAAGAAAAAGTGTTAGCCGAAGTCCGATCAGACGGAAGAGCTATTCAAGGAGCCCTAGTCCTGTTCGCAGGCCAAGATCACCGCCATCTGATCGAGGACGAAGTGTATCCAGAAGTGTGTCACCGGATGGATCACCCAAGCGCATCAGGAGGGGAAGGGGTTTCAGTCAACGGTATTCTTATGCGCGGAGATATAGAACCCCCTCGGTATCTCCAGTGAGGTCTTATCGTTACAGTGGTAGAATGGAGCGGGAGAGATGGTTAAATTATCAACTTACATTATATCTAACTTGTAGATATAGAAGCAGAAGAAGCAGGTCACCTACTGTATCACGGAGTCCCCGATACAGAAGCCGTCGTTATAGCCGGAGTCGCAGTCCAATTCGAAGCCGCTCCCCAGTTGAGACATCCAGGTATCGCCCTTCTCCTCGGGTTGAGAGGCGGAGATCACCTTCAAGAAGCAAGAGCCCATCACAATCAAAGTCCTCACTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTGA 2661 54.23 MTKKKNPLVFMDVSIDGDPIERMIFELFYDVAPKTAENFRALCTGEKGIGPKTGKPLHYKGSFFHRIVKGSMAQYFYRLCTSLCIVKLVFVCTLTGGYGNDFPDELPRLKHDEAGLLSMLVADRDNLGSHFLVTFKACHNLDRKCVVFGKLVQGFDVLKKIEVVGDEDGCPTVTVKIINCGDYTEDKKRNSKSRTRKDASSQDDEVIRKRKQKKSSRDKRRRRKYYTSESESSSDTEIESSESESDSDSDFSLSSDDTSSSDYRPKKRKRSSKKDRYRHGRRKDKKREKKRRQRDKRSKRRSKRALDSLTDSESENKGESSLASDGVDAHGKDEKREESLVKAPKDSVSPVLNVHHKRKDGADSVVNDDGRTPLENGDQRSNGISALDSDRKMERQPDVVDDHPGKSSRSRSLSPKRTMSKSMSISPRKSFSKSPSVSPKQSMSRSRSVSRSPLVPLRNRNVSKSPIRSDSSRSPVRSISRSPSEDRKGRGSRRSPPRARSLRSISRSPANLSRSPPRKVVRKSVSISPARRSLSGSPVRSAQKSVSRSSGRLPPSRKSVSRSPIRRKSYSRSPSPVRRPRSPPSDRGRSVSRSVSPDGSPKRIRRGRGFSQRYSYARRYRTPSVSPVRSYRYSGRMERERWLNYQLTLYLTCRYRSRRSRSPTVSRSPRYRSRRYSRSRSPIRSRSPVETSRYRPSPRVERRRSPSRSKSPSQSKSSLPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43561205 43567688 + Bda003153.1 Bda01g00993 993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00993 886 MobiDBLite consensus disorder prediction 716 784 - -
Bda01g00993 886 MobiDBLite consensus disorder prediction 499 513 - -
Bda01g00993 886 MobiDBLite consensus disorder prediction 658 784 - -
Bda01g00993 886 MobiDBLite consensus disorder prediction 185 211 - -
Bda01g00993 886 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 493 - -
Bda01g00993 886 MobiDBLite consensus disorder prediction 411 479 - -
Bda01g00993 886 MobiDBLite consensus disorder prediction 351 366 - -
Bda01g00993 886 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 493 - -
Bda01g00993 886 SUPERFAMILY Cyclophilin-like 4 184 IPR029000 -
Bda01g00993 886 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 181 IPR002130 GO:0000413|GO:0003755
Bda01g00993 886 Gene3D - 1 183 IPR029000 -
Bda01g00993 886 MobiDBLite consensus disorder prediction 235 251 - -
Bda01g00993 886 MobiDBLite consensus disorder prediction 385 409 - -
Bda01g00993 886 MobiDBLite consensus disorder prediction 266 301 - -
Bda01g00993 886 MobiDBLite consensus disorder prediction 326 343 - -
Bda01g00993 886 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 158 IPR002130 GO:0000413|GO:0003755
Bda01g00993 886 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 IPR002130 GO:0000413|GO:0003755
Bda01g00993 886 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Bda01g00993 886 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Bda01g00993 886 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 182 IPR002130 GO:0000413|GO:0003755
Bda01g00993 886 MobiDBLite consensus disorder prediction 185 615 - -
Bda01g00993 886 MobiDBLite consensus disorder prediction 528 557 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00993 K09566 PPIG; peptidyl-prolyl isomerase G (cyclophilin G) [EC:5.2.1.8] - csv:101210345 538.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00993 Bda-Chr1:43561205 Bda08g01139 Bda-Chr8:33745430 2.28E-79 dispersed
Bda01g00993 Bda-Chr1:43561205 Bda02g00857 Bda-Chr2:49028310 4.33E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g446 . . . . Bpe02g01238 . . . Cmo05g00413 Cmo12g00276 . Cma05g00402 . Car12g00307 . Cpe07g00284 . Bhi04g00994 . . . Hepe10g0270 . . . . . . . . . Cone4ag1806 Cone7ag1714 . . . . . Cme03g01642 Blo17g00026 Blo18g00035 Bda01g00993 . . . Bma01g01285 Bma02g00030 . . . . Cma12g00325 . Car05g00336 Cpe11g00342 . . . . . . . . Cla08g01312 Cam08g1772 Cec08g1354 Cco08g1474 Clacu08g1468 . Cre08g1255 Lsi08g01176 . Chy03g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021298 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00993 Bda_Chr01 FPKM 4.163567 7.425275 4.381941 4.803539 2.474784 3.112112 3.392719 2.090479 3.330306