Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00999 ATGGGAGAGACGAGGGACGCTGAATATGAGGACGAGCTCGTCGACTATGAAGATGAGGAGTATAAGGCATCCGACGCCGTTGGAGCCAAAGTCAATGGCGAAGCAGCGAAGAAGGGTTATGTCGGCATTCATAGCTCAGGATTCAGAGACTTTCTTTTGAAGCCAGAGCTTCTCCGTGCTATTTTATTCATTTATTTGACAATGCTTTTTTCTTCTTCTTCTTTTTTCTCCTTTTTGCAACATGAATGTATTCCCCAAGCTATTCTGGGTATGGATGTTCTTTGTCAAGCTAAATCCGGGATGGGAAAAACTGCTGTTTTCGTACTATCCACCCTGCAGCAAATTGACCCAGTAGCGGGTCAAGTTTCTGCTCTGGTTCTTTGTCATACAAGAGAGCTAGCATACCAGATTTGCCATGAGTTTGAGAGGTTCAGTTCTTACTTGTCTGATCTCAAAGTATCGGTGTTCTATGGTGGTGTCAATATTAGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATTTTGGCATTGGCAAGAGATAAGGATCTTTCTCTAAAGAACGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAATCACTTGACATGAGAAGGGATGTGCAGGAGATTTTCAAGATGACGCCTCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATTCGTCCGGTTTGCCATAAATTTATGCAAGATCCTATGGAAATATATGTAGATGACGAGGCAAAATTGACCTTGCACGGCCTTGTGCAGCACTACATCAAATTGACTGAAGCAGAGAAAAATCGGAAGTTGAATGACCTTCTAGATGCGTTGGACTTCAATCAAGTTGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTGAGCTGGATAAGTTACTGGTGGAGTGTAATTTTCCTTCTATATGCATTCACTCTGGCATGTCTCAGGAGGAAAGGTTTGTTATTTACCTATTGATTAACTCATCTATCGATTGTTTAAGGTTGCCAATCATAATGGCAATAATCTGCTGGTGCAGGTTGACGCGTTACAAGGGTTTCAAGGAGGGGCATAAGAGGATTCTTGTTGCTACAGATTTGGTTGGTCGGGGTATTGACATTGAACGTGTGAACATTGTTATTAATTATGATATGCCAGATTCTGCCGACACTTATCTACACAGGGTTGGGAGAGCTGGAAGGTTTGGTACTAAAGGGCTGGCAATTACTTTTGTATCATCTGCTTCCGACACTGATGTTCTCAACAATGTGCAACAAAGGTTTGCAGTGAATATAATGGAACTTCCAGAGCAGATTGATACTTCTACTTACAGTATGTTCATATAG 1389 41.4 MGETRDAEYEDELVDYEDEEYKASDAVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAILFIYLTMLFSSSSFFSFLQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERFVIYLLINSSIDCLRLPIIMAIICWCRLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDTDVLNNVQQRFAVNIMELPEQIDTSTYSMFI 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43582058 43585437 - Bda003158.3 Bda01g00999 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00999 462 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 285 457 IPR001650 -
Bda01g00999 462 SMART helicmild6 309 417 IPR001650 -
Bda01g00999 462 SMART ultradead3 72 273 IPR014001 -
Bda01g00999 462 CDD SF2_C_DEAD 270 426 - -
Bda01g00999 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 84 257 IPR014001 -
Bda01g00999 462 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 28 338 - -
Bda01g00999 462 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 361 456 - -
Bda01g00999 462 Gene3D - 266 460 IPR027417 -
Bda01g00999 462 Pfam DEAD/DEAH box helicase 80 243 IPR011545 GO:0003676|GO:0005524
Bda01g00999 462 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 338 - -
Bda01g00999 462 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 361 456 - -
Bda01g00999 462 Pfam Helicase conserved C-terminal domain 283 417 IPR001650 -
Bda01g00999 462 Gene3D - 42 265 IPR027417 -
Bda01g00999 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 430 IPR027417 -
Bda01g00999 462 CDD DEADc_DDX39 45 259 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00741 Bda01g00999 CCT
Bda01g00999 Bda03g00068 CCT
Bda01g00999 Bda01g00741 ECH
Bda01g00741 Bda01g00999 ECH
Bda01g00999 Bda03g00068 ECH
Bda01g00999 Bda13g01265 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00999 Bda-Chr1:43582058 Bda10g00864 Bda-Chr10:43138489 1.62E-65 dispersed
Bda01g00741 Bda-Chr1:34683729 Bda01g00999 Bda-Chr1:43582058 0 wgd
Bda01g00999 Bda-Chr1:43582058 Bda13g01265 Bda-Chr13:35043466 0 wgd
Bda01g00999 Bda-Chr1:43582058 Bda03g00068 Bda-Chr3:735133 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00999 K12812 - csv:101217346 747.658