Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01002 ATGAAAATTCGTGGTTTACTGTATTCGATAACCCTTGGGGCTTTGGCTACACTTCTTCTTCCCCAACTCTGCTCTACCAGTACTCCAAGTACAGGCAATATTTTACCGGGATTTCAAGGAGCTCAGATGACTTTCTTCGCTAGCGGTGGATTTTTTCTTTATTCCAACAGTTCAGAATTCGCATTTGGGTTCCCCGCTCTACAAGATGCGACCATGTTTCTTCTCGCCGTCATCCACCGTAGCAGCGACAAAACAGTCTGGTCTGCCAACAGGGACTCCCCAGTTTCGACGGCTGATGAATTCGTGTTCGACGAAAAGGGAAACGCTTTCCTCAAACGCGGCGGAAACGTTGTCTGGTCCACCGACACCGGCGATAAGGGAGTTTCTTCTCTGGCGTTGCAGGACACGGGGAATTTAGCTTTGATCGGAAACGACGGTGGAGTGATTTGGCAAAGTTTCGGCCATCCAACGGATACCCTTCTGTCAGACCAGGAATTTTCTGAGGGAATGAGGCTGACAAGCGAGCGAGGAGCATACAATTTGACTTATTTTCTGGAAATAAAGTCTGGGGATATGGTTTTATCTGTAAGTTTTCCAACTCCTCAGCCTTACTGGTCTATGAGAAAGGAGAGTCATAAGACCATCCCCGAAGAAGAGGGGGTTGTTTCTTCAGCATCTCTCGTTGCAAATTCATGGCGAATATATAACAAAGACAAAGTCTTGCTCTGGCAATTCATCTTCTCCACCACCAATTACACAAACTCTACTTCCATGGCGGTCTTAGAAAGTAATGGGATGATTAGTTTCCATTATCTTCCGAAAGGAGGGCCCAGTATAGATTCAGCAACGAAAATACCTGAAGATCAATGCAGCCTACCTGTATTTTGTGGAGCTTACTCTGTTTGTTCTACGGGCTCAAATTGTACGTGTCTCTCTGTTCTCAGCCCCCGATCAAATTGCCAAACTGGGATTGTTTCTCCTTGTGGTTCATCGCAGAGTAACATGCAGCTTGAGGATGCTGGAAATGGGCTCAATTACTTTGCTCTCGAGTTTCTTCAGCCCTTCTCTAAAACAGATTTGGATGGCTGCAAATCCTCTTGCATTTCTAACTGTTCCTGTCTAGCTTTGTTCTTCCAATCTAGTTCTGAAAGTTGTTTCTTGCTTGATAGAGTCGGTAGCTTTCAGGGCTCCACCAGTGGGTCTGATTATGTTTCATACATCAAGGTCTTGGGTGAAGAGAAGAATAGTGGGGATGACGGAGGAGATGGAAATGGCAAGAAACACCATGCTTTAGTTGTTGTGGTGATTGCTATTTCCACGGTCGCCGCAGTTTCTGGTTTACTCTATTTCAGCTACAGGTACATGAAGAAGAAGAAGAAGCAGTTATTGCCGGAGTCTCGGGATGGAAGCTCTGAAGACGATAAATTCTTCGAGGGCTTAACTGGAATGCCGATTCGATTCAGTTTCAAAGATCTTCTAGATGCGACCAACGATTTCTCTGTCAAGCTGGGACAAGGAGGGTTCGGTTCAGTCTACTTGGGCGGCTTACCAGATGGGACTCGGCTGGCGGTGAAGAAGCTGGAAGGGATCGGACAGGGGAAGAAAGAATTCCGAGCTGAAGTCAGCATCATCGGAAGCATCCATCACCTTCACTTGGTCAGGCTTAAGGGCTTCTGTGCAGAAGGAAGCCATCGTCTTCTTGCTTATGAATTCATGGCCAATGGGTCCTTGGACAAATGGATATTCAGGAAGAAGAAACAAGATTTCCTGCTAGATTGGGACAGAAGGTTCAATATAGCATTAGGAACAGCAAAAGGACTAGCTTACCTCCACCAAGACTGCGATGCCACGATAATTCACTGCGATATCAAACCAGAAAACGTCCTTCTAGACGATAATTTTCTGGCCAAAGTTTCGGATTTCGGCCTGGCCAAGCTGATGACTCGAGAGCAAAGCCATGTCTTCACGCAAATGAGAGGCACAAGAGGGTACCTCGCCCCGGAATGGATCATAAATTATGCAATATCAGAGAAAAGCGACATCTACAGCTACGGAATGGTGCTGCTCGAGATTATCGGCGGAAGAAAAAACTACGATCCGACGGAACCTCCAGAGAAATCCCACTTGCCATCTTATGCTTACAAGAAGATGGAAGAAGGAAAATTACGAGACATTCTCGACCCAAACCTCGCTGCTGAGGAATGGGACGAGAGAGTTTCGACTGTGATAAAGGTGGCATTGTGGTGCATTCAGGAAGACATGGCCCAGAGGCCGGCCATGGCAAAAGTGGTTCAAATGCTGGAAGGTGCCTGCATAGTGCCAGACCCTCCGACCACCTCTTCCTTGGGTTCGCGCCTGAACTCCAACTTTTTCAATCCGATAAGCGAGGAGGGAACTTCATCCGGTCCGTCAGATTGTAACAGCGATGCTTATATGTCTGCCGCTCGCCTTTCTGGTCCGAGATAG 2466 47.04 MKIRGLLYSITLGALATLLLPQLCSTSTPSTGNILPGFQGAQMTFFASGGFFLYSNSSEFAFGFPALQDATMFLLAVIHRSSDKTVWSANRDSPVSTADEFVFDEKGNAFLKRGGNVVWSTDTGDKGVSSLALQDTGNLALIGNDGGVIWQSFGHPTDTLLSDQEFSEGMRLTSERGAYNLTYFLEIKSGDMVLSVSFPTPQPYWSMRKESHKTIPEEEGVVSSASLVANSWRIYNKDKVLLWQFIFSTTNYTNSTSMAVLESNGMISFHYLPKGGPSIDSATKIPEDQCSLPVFCGAYSVCSTGSNCTCLSVLSPRSNCQTGIVSPCGSSQSNMQLEDAGNGLNYFALEFLQPFSKTDLDGCKSSCISNCSCLALFFQSSSESCFLLDRVGSFQGSTSGSDYVSYIKVLGEEKNSGDDGGDGNGKKHHALVVVVIAISTVAAVSGLLYFSYRYMKKKKKQLLPESRDGSSEDDKFFEGLTGMPIRFSFKDLLDATNDFSVKLGQGGFGSVYLGGLPDGTRLAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCAEGSHRLLAYEFMANGSLDKWIFRKKKQDFLLDWDRRFNIALGTAKGLAYLHQDCDATIIHCDIKPENVLLDDNFLAKVSDFGLAKLMTREQSHVFTQMRGTRGYLAPEWIINYAISEKSDIYSYGMVLLEIIGGRKNYDPTEPPEKSHLPSYAYKKMEEGKLRDILDPNLAAEEWDERVSTVIKVALWCIQEDMAQRPAMAKVVQMLEGACIVPDPPTTSSLGSRLNSNFFNPISEEGTSSGPSDCNSDAYMSAARLSGPR 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43605480 43607945 - Bda003161.1 Bda01g01002 1002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01002 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Bda01g01002 821 ProSiteProfiles Protein kinase domain profile. 497 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01002 821 MobiDBLite consensus disorder prediction 793 808 - -
Bda01g01002 821 Gene3D - 45 155 IPR036426 -
Bda01g01002 821 Pfam D-mannose binding lectin 85 167 IPR001480 -
Bda01g01002 821 CDD B_lectin 48 156 IPR001480 -
Bda01g01002 821 ProSiteProfiles PAN/Apple domain profile. 328 411 IPR003609 -
Bda01g01002 821 ProSiteProfiles Bulb-type lectin domain profile. 38 154 IPR001480 -
Bda01g01002 821 MobiDBLite consensus disorder prediction 793 821 - -
Bda01g01002 821 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 821 - -
Bda01g01002 821 Gene3D Transferase(Phosphotransferase) domain 1 572 773 - -
Bda01g01002 821 CDD PAN_AP_plant 355 409 - -
Bda01g01002 821 Gene3D Phosphorylase Kinase; domain 1 465 571 - -
Bda01g01002 821 ProSitePatterns Protein kinases ATP-binding region signature. 503 526 IPR017441 GO:0005524
Bda01g01002 821 SMART blect_4 44 156 IPR001480 -
Bda01g01002 821 SMART serkin_6 497 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01002 821 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 821 - -
Bda01g01002 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 207 IPR036426 -
Bda01g01002 821 SUPERFAMILY Protein kinase-like (PK-like) 481 768 IPR011009 -
Bda01g01002 821 Pfam Protein kinase domain 501 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01002 821 PIRSF SRK 8 817 IPR024171 GO:0004674
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01002 - - - jre:108985155 1080.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00747 Bda01g01002 CCT
Bda01g01002 Bda01g00747 ECH
Bda01g00747 Bda01g01002 ECH
Bda01g01002 Bda13g01262 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01002 Bda-Chr1:43605480 Bda05g00534 Bda-Chr5:53007105 0 dispersed
Bda07g00308 Bda-Chr7:4173223 Bda01g01002 Bda-Chr1:43605480 5.95E-25 dispersed
Bda09g00539 Bda-Chr9:7066402 Bda01g01002 Bda-Chr1:43605480 6.01E-22 dispersed
Bda01g01467 Bda-Chr1:50584800 Bda01g01002 Bda-Chr1:43605480 1.17E-109 transposed
Bda04g00206 Bda-Chr4:7872130 Bda01g01002 Bda-Chr1:43605480 5.81E-107 transposed
Bda01g00747 Bda-Chr1:34715296 Bda01g01002 Bda-Chr1:43605480 2.73E-94 wgd
Bda01g01002 Bda-Chr1:43605480 Bda13g01262 Bda-Chr13:35030767 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69436 PF00069 Pkinase 2.80E-48 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01002 Bda_Chr01 FPKM 14.024562 15.622421 7.160506 7.394746 11.831084 11.916964 14.85835 3.647982 4.149787