Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01004 ATGTTTGCCGCTGAAAATGGACTCAAAGGAGATCCGAGGCTCCTCGCCATTTCTCAAGCCATTAGAGTCGTTCCTCACTTCCCTAAGCCTGGAATAATGTTTCAGGACATTACTACCTTAATGCTCGATCACAAGGCGTTCAAGGACACTGTTGACATCTTCGTTGACCGTTACCGGGCCATGGACATCTCTGTAGTTGCTGGTTGTGAATTAATCTCAGAATCATATGACTTGGAGTATGGAACCGACTGCCTGGAGATGCAAGTCGGTGCTATTCAAGCCGGCGAAAGAGCAATAGTGATCGATGACTTGGTTGCCACGGGTGGGACCCTTTCGGCTGCGATTAGGCTTCTGGAACGAATGGCTGCTGAAGTAATCGAGTGTGCTTGCGTAATTGGGCTCCCCGAGTTGAAGGGGCAACGGAGACTCAACGGGAAGCCGCTGTATATACTTGTCGAGCCTCGACAAGTCTGA 474 50.0 MFAAENGLKGDPRLLAISQAIRVVPHFPKPGIMFQDITTLMLDHKAFKDTVDIFVDRYRAMDISVVAGCELISESYDLEYGTDCLEMQVGAIQAGERAIVIDDLVATGGTLSAAIRLLERMAAEVIECACVIGLPELKGQRRLNGKPLYILVEPRQV 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43615071 43616824 + Bda003163.1 Bda01g01004 1004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01004 157 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5-LIKE ISOFORM X1 70 156 - -
Bda01g01004 157 Gene3D - 71 154 IPR029057 -
Bda01g01004 157 CDD PRTases_typeI 85 153 IPR000836 -
Bda01g01004 157 Gene3D - 5 70 IPR029057 -
Bda01g01004 157 Pfam Phosphoribosyl transferase domain 90 136 IPR000836 -
Bda01g01004 157 SUPERFAMILY PRTase-like 20 147 IPR029057 -
Bda01g01004 157 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 1 70 - -
Bda01g01004 157 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 70 156 - -
Bda01g01004 157 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5-LIKE ISOFORM X1 1 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01004 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - mnt:21388010 263.077
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00639 Bda01g01004 CCT
Bda01g01004 Bda03g00126 CCT
Bda01g01004 Bda13g01256 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01004 Bda-Chr1:43615071 Bda08g00567 Bda-Chr8:5776384 2.15E-66 dispersed
Bda01g01004 Bda-Chr1:43615071 Bda13g01256 Bda-Chr13:35013611 7.71E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g160 Blo01g01447 Blo12g01030 Bda01g00639 Bda03g00126 Bpe02g01249 Bpe02g00507 Bma04g00113 Bma01g02195 . . Cma01g01702 . Car09g00311 . . . Cpe06g00257 . . . . . . . Cla05g01625 Cam05g1735 Cec05g1743 Cco05g1800 Clacu05g1725 Cmu05g1609 Cre05g1738 Cone4ag1698 Cone7ag1614 Cone17ag0943 Cone20ag0286 Lsi04g01389 . . . . . Bda01g01004 . . Bpe04g00111 . . Sed05g1792 Cmo01g01809 Cmo09g00362 Cma09g00363 . Car01g01320 . . Cpe02g00289 Bhi09g03084 Tan01g3470 Cmetu07g2288 . Hepe01g1915 Mch11g0450 . . . . . . . . . . . Cme07g00178
Vvi4g497 . . . . Bpe02g01252 . . . Cmo05g00378 Cmo12g00294 . Cma05g00376 . Car12g00327 Sed01g1380 . . Bhi04g00941 Tan02g2731 Cmetu03g1736 . Hepe10g0243 . Lcy13g1798 . . . . . . . . . Cone17ag1015 Cone20ag0355 . . . Cme03g01606 . Blo18g00019 Bda01g01004 Bda13g01256 Bpe14g00584 . Bma01g01273 . . . . . Cma12g00344 . Car05g00320 . . . . . . . . . Cla08g01342 Cam08g1804 Cec08g1383 Cco08g1511 Clacu08g1498 . Cre08g1285 Lsi08g01213 . Chy03g01111 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda08g00974 . 90 573 PRT Gene Family AT2G16570 84.6 7.2e-240 826.6
Bda08g00971 . 65 522 PRT Gene Family AT2G16570 81.9 5.7e-221 763.8
Bda08g00974 . 90 573 PRT Gene Family AT4G34740 85.6 1.0e-241 832.8
Bda08g00971 . 67 522 PRT Gene Family AT4G34740 83.2 3.3e-221 764.6
Bda08g00974 . 91 546 PRT Gene Family AT4G38880 75.1 2.4e-197 685.3
Bda08g00971 . 60 520 PRT Gene Family AT4G38880 73.0 4.3e-194 674.5
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda06g00037 CCT 5 98 PRT Gene Family AT4G22570 85.1 1.6e-44 175.3
Bda08g00567 . 5 97 PRT Gene Family AT4G22570 82.8 2.0e-42 168.3
Bda08g01357 . 4 94 PRT Gene Family AT4G22570 81.3 3.9e-38 154.1
Bda13g01256 BCT 11 100 PRT Gene Family AT4G22570 77.8 3.3e-37 151.0
Bda06g00037 CCT 1 96 PRT Gene Family AT4G12440 83.3 7.7e-41 162.9
Bda08g00567 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda01g00859 . 1 186 PRT Gene Family AT1G71750 61.4 6.6e-63 237.3
Bda09g00447 . 16 470 PRT Gene Family AT1G55810 82.2 1.1e-219 759.2
Bda07g00427 . 28 502 PRT Gene Family AT1G55810 80.0 6.2e-218 753.4
Bda13g01653 . 61 483 PRT Gene Family AT1G55810 78.3 2.5e-195 678.3
Bda09g00447 . 67 474 PRT Gene Family AT3G27440 75.2 8.6e-182 633.3
Bda13g01653 . 81 483 PRT Gene Family AT3G27440 75.4 9.9e-178 619.8
Bda07g00427 . 79 509 PRT Gene Family AT3G27440 71.2 3.2e-176 614.8
Bda13g01653 . 1 483 PRT Gene Family AT3G27190 83.4 2.0e-235 811.6
Bda09g00447 . 3 469 PRT Gene Family AT3G27190 74.7 1.4e-207 719.2
Bda07g00427 . 15 501 PRT Gene Family AT3G27190 70.9 4.8e-200 694.1
Bda05g00954 . 1 235 PRT Gene Family AT3G53900 75.0 2.8e-102 368.6
Bda09g00447 . 1 470 PRT Gene Family AT4G26510 83.7 1.0e-231 799.3
Bda07g00427 . 13 502 PRT Gene Family AT4G26510 80.1 2.9e-226 781.2
Bda13g01653 . 11 483 PRT Gene Family AT4G26510 74.4 3.7e-205 711.1
Bda13g01653 . 1 483 PRT Gene Family AT5G40870 84.7 7.6e-238 819.7
Bda09g00447 . 3 472 PRT Gene Family AT5G40870 73.4 9.0e-207 716.5
Bda07g00427 . 15 504 PRT Gene Family AT5G40870 70.5 4.8e-200 694.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01004 Bda_Chr01 FPKM 4.95621 5.411685 6.106053 6.468847 9.964061 7.990779 10.331991 5.389086 6.108831