Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01012 ATGATGAGCGTCATGTCCGAAAATTACAGGGCCTTGCAGTCCGAAATGAGGGATTTGATGAACCATAAATCAAGAAAACGAAAGGCGGAGGACGAAGAACACAGCAACAACTGGAGTAGGAGCGATGAAGAGTGCTGTAAAAGGAGAAGAGAAAACAGCAAAGCCAACGTCAAACCTAAGAGAACTATAATTCAGACCCACGCCTCCGATTCTAATCTAATTGTAAAAGATGGTTATCAATGGAGGAAATATGGGCAAAAGGTTACAAGAGATAATCCTTCTCCCAGAGCTTATTACAAGTGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTTCAAAGAAGTGCAGAAGACCCATCAATTTTAGTGGCCACATATGAAGGAGAGCATAATCACATAAACCCTTCGACAATAGGGTTTGTTTTAGCGTCAGACCAAGTGATGAACCTTGCTCCTTCGCCGCCATTCGCGTCTTCCAGGAGACCTTCACCTCCTACAGTGACGCTGGATTTAATCCAATCAGGGTTTAGCGGAGAAAGTGGAGAGAAGGCAGAAGTGATTAATCAGGCTTTGGTACGGCAGATGGCTTCTTCTCTGACGAAGAACCCTAAGTTCGCTGCAGCTCTTGCTGCTGCCATTTCAGCAAACCATGCTCCTGCGTAG 666 45.35 MMSVMSENYRALQSEMRDLMNHKSRKRKAEDEEHSNNWSRSDEECCKRRRENSKANVKPKRTIIQTHASDSNLIVKDGYQWRKYGQKVTRDNPSPRAYYKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHINPSTIGFVLASDQVMNLAPSPPFASSRRPSPPTVTLDLIQSGFSGESGEKAEVINQALVRQMASSLTKNPKFAAALAAAISANHAPA 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43678128 43678973 + Bda003170.1 Bda01g01012 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01012 221 Gene3D WRKY domain 59 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda01g01012 221 ProSiteProfiles WRKY domain profile. 70 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g01012 221 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 216 IPR044810 GO:0003700
Bda01g01012 221 MobiDBLite consensus disorder prediction 19 59 - -
Bda01g01012 221 SUPERFAMILY WRKY DNA-binding domain 72 134 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda01g01012 221 SMART WRKY_cls 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g01012 221 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g01012 221 Coils Coil 12 32 - -
Bda01g01012 221 MobiDBLite consensus disorder prediction 19 52 - -
Bda01g01012 221 PANTHER WRKY TRANSCRIPTION FACTOR 40-RELATED 1 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01012 Bda-Chr1:43678128 Bda05g00494 Bda-Chr5:51733979 2.29E-58 dispersed
Bda01g00763 Bda-Chr1:34929921 Bda01g01012 Bda-Chr1:43678128 7.47E-47 wgd
Bda01g01012 Bda-Chr1:43678128 Bda03g00095 Bda-Chr3:899767 1.91E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15412 PF03106 WRKY 1.20E-24 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01012 - - jre:109005228 218.394