Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01013 ATGTCTGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGTGCCTCCAAGACCTACCCTCAGCAGGCCGGTACCATTCGTAAGAACGGTTACATCGTCATCAAGAACCGTCCCTGCAAGGTTGTCGAGGTTTCTACTTCAAAGACTGGGAAGCATGGCCATGCCAAGTGTCACTTTGTAGGGATTGATATTTTCACTGCAAAGAAACTTGAGGATATTGTTCCATCTTCCCACAATTGTGATGTTCCCCATGTTAATCGCACGGATTATCAACTGATTGACATATCTGAAGATGGATTTGTAAGTCTCTTAACTGACAATGGCAACACCAAGGATGACTTGAAGCTTCCCACGGATGATAGTTTACTCAGCCAGATTAAAGACGGATTTGCTGAAGGAAAGGACCTTGTGGTGTCGGTTATGTCAGCAATGGGGGAGGAACAAATCTGTGCTCTCAAGGACATTGGACCGAAGAAC 480 46.88 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43700262 43702066 + Bda032925 Bda01g01013 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01013 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda01g01013 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda01g01013 160 CDD S1_eIF5A 86 156 - -
Bda01g01013 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda01g01013 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Bda01g01013 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda01g01013 160 Gene3D - 86 159 IPR012340 -
Bda01g01013 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda01g01013 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Bda01g01013 160 MobiDBLite consensus disorder prediction 1 21 - -
Bda01g01013 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda01g01013 160 Gene3D - 1 85 IPR014722 -
Bda01g01013 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01013 Bda03g00098 CCT
Bda01g00663 Bda01g01013 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01013 Bda-Chr1:43700262 Bda10g01073 Bda-Chr10:44726450 4.61E-113 dispersed
Bda01g01013 Bda-Chr1:43700262 Bda03g00098 Bda-Chr3:920357 2.02E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01013 K03263 K02180 egr:104436092 320.857