Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01015 CTGCCGATGGAAAACAGAGCCCTGTCTTTCTTCTTCCTTCTCGTCTTCTGCATAGGGTTTTCAGAAGGCAGAGAAATCATCGTAGGCGGAAAGTCTGACACATGGGAAATCCCCTCCTCCTCTCACTCCCAGCCTCTCAATGAATGGGCTCAATCCACTCGTTTTCGCGTCGGCGATGCTCTCGTGTGGAATTACGACGGCAAAAAAGACTCCGTTCTGTTAGTATCCGAGGAAGATTACGCGTCCTGCAATACATCTACCCCAATCGCAGAGTACAAGGACGGAAACACAAAGCTGAAGCTGGAGCGAGCAGGACCTTACTATTTCATCAGTGGAGCCAAGGGCCACTGCGAGCAGGGCCAGAAGATGATCGTAGTGGTTCTTTCTCCGAGAAACCGCCACTTTTCATTTTCTCCGGCTCCTTCGCCCGCACAGTCAGAGGGTCCGGCCGTTGCTCCCTCCAGCCGTGGTTCCAATCTTCAGGGTGGTTTAGTAGTAGCAGTAATTGGACTTCTGGGTGTAGGTGCTATCATGGGTTGA 540 52.04 LPMENRALSFFFLLVFCIGFSEGREIIVGGKSDTWEIPSSSHSQPLNEWAQSTRFRVGDALVWNYDGKKDSVLLVSEEDYASCNTSTPIAEYKDGNTKLKLERAGPYYFISGAKGHCEQGQKMIVVVLSPRNRHFSFSPAPSPAQSEGPAVAPSSRGSNLQGGLVVAVIGLLGVGAIMG 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43707226 43707855 + Bda003172.1 Bda01g01015 1015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01015 179 Gene3D - 23 132 IPR008972 -
Bda01g01015 179 CDD OsENODL1_like 24 128 IPR041846 -
Bda01g01015 179 Pfam Plastocyanin-like domain 40 121 IPR003245 GO:0009055
Bda01g01015 179 PANTHER EARLY NODULIN-LIKE PROTEIN 3 9 171 - -
Bda01g01015 179 SUPERFAMILY Cupredoxins 24 128 IPR008972 -
Bda01g01015 179 ProSiteProfiles Phytocyanin domain profile. 24 129 IPR003245 GO:0009055
Bda01g01015 179 MobiDBLite consensus disorder prediction 137 158 - -
Bda01g01015 179 PANTHER BLUE COPPER PROTEIN 9 171 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01015 - - - csv:101210664 216.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01015 Bda-Chr1:43707226 Bda07g00343 Bda-Chr7:4485962 3.44E-31 dispersed
Bda01g01015 Bda-Chr1:43707226 Bda09g00514 Bda-Chr9:6802308 4.23E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda01g01015 . 24 177 Phytocyanin Superfamily AT5G25090 53.4 4.7e-39 157.9
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01015 Bda_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0