Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01016 ATGGGTGTCTACCTAAGCTCGCCCAAGATCGAGAAGTTCTCGGAAGATGGTGAGAATGGAAGGCTGAGATACGGTTTGTCATCCATGCAAGGGTGGCGTGCCACAATGGAGGATGCTCATGCTGCATATCCTGATCTTGATGCCTCCGCATCATTCTTTGGTGTTTATGATGGTCATGGAGGTAAAGTAGTTGCCAAATTTTGTGCGAAGTATCTACACCAGCAAGTTCTGAAGAATGAAGCATATGCTGCAGGAGATACAAGAACTGCTTTACAACAAGCGTTTATCAGAATGGACGAAATGATGCGTGGGCAAAGGGGTTGGAGAGAGCTGGCTATTCTTGGAGATAAAATAAACAAGTTTACTGGTATGATAGAAGGGTTTATCTGGTCACCACGAAGCAACGATGTTAGTAACCAAGTCGACGATTGGGCTTTTGAAGAGGGCCCTCACTCTGATTTTACTGGTCCAACTTCCGGGTGCACGGCTTGTGTTTCAGTTATTAGAAACAACCAACTTCTTGTTGCAAATGCCGGTGACTCTCGTTGTGTGCTATCGAGGGCAGGCAAGGCTCAGAATATGTCTACTGATCACAAACCCGATCTTGAGGTTGAGAAGGAAAGGATTTTAGAAGCTGGTGGATTTATCCATGCTGGAAGAGTCAATGGTTGCTTGAATCTCGCCAGAGCAATTGGTGATGTGGAATTCAAGCAAAATAAATTTTTGCCTGCCGAAATGCAAATCGTGACTGCCCATCCTGATGTTACCGTGGCTGAGCTCAACAATGACGATGATTTTCTTGTGCTGGCATGTGATGGCATCTGGGATTGTATGTCTAGCCAACAACTTGTGGAGTTTATACACGAACAACTAAGAACGGAAAGCAAGCTGTCTGTGGTGTGTGAAAGAGTTCTGGACCGATGTTTAGCACCAACAGCGAGTGGGGACGGATGTGATAACATGACGATGATCTTAGTGCAGTTGAAGAAACAACCCACCACAAGTGGAGATGAACCATCTTCTCCCTCAACGTCCTCCGGGAGAAGAAATTGTTAA 1056 45.55 MGVYLSSPKIEKFSEDGENGRLRYGLSSMQGWRATMEDAHAAYPDLDASASFFGVYDGHGGKVVAKFCAKYLHQQVLKNEAYAAGDTRTALQQAFIRMDEMMRGQRGWRELAILGDKINKFTGMIEGFIWSPRSNDVSNQVDDWAFEEGPHSDFTGPTSGCTACVSVIRNNQLLVANAGDSRCVLSRAGKAQNMSTDHKPDLEVEKERILEAGGFIHAGRVNGCLNLARAIGDVEFKQNKFLPAEMQIVTAHPDVTVAELNNDDDFLVLACDGIWDCMSSQQLVEFIHEQLRTESKLSVVCERVLDRCLAPTASGDGCDNMTMILVQLKKQPTTSGDEPSSPSTSSGRRNC 351
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 43708717 43712477 - Bda003173.1 Bda01g01016 1016
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01016 351 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Bda01g01016 351 MobiDBLite consensus disorder prediction 329 351 - -
Bda01g01016 351 Gene3D - 1 329 IPR036457 -
Bda01g01016 351 PANTHER PROTEIN PHOSPHATASE 2C 1 338 IPR015655 GO:0004722|GO:0006470
Bda01g01016 351 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Bda01g01016 351 Pfam Protein phosphatase 2C 155 314 IPR001932 -
Bda01g01016 351 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Bda01g01016 351 SMART PP2C_4 13 326 IPR001932 -
Bda01g01016 351 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Bda01g01016 351 CDD PP2Cc 23 328 IPR001932 -
Bda01g01016 351 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 338 - -
Bda01g01016 351 SMART PP2C_SIG_2 28 328 IPR001932 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bda01g01016 Bda03g00105 CCT
Bda01g01016 Bda03g00105 ECH
Bda01g01016 Bda13g01275 BCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01016 Bda-Chr1:43708717 Bda13g01275 Bda-Chr13:35110645 1.19E-38 dispersed
Bda04g00787 Bda-Chr4:57792619 Bda01g01016 Bda-Chr1:43708717 0 transposed
Bda01g01016 Bda-Chr1:43708717 Bda03g00105 Bda-Chr3:950950 3.73E-161 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01016 K17499 - jre:109001007 583.178