Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g01016 | ATGGGTGTCTACCTAAGCTCGCCCAAGATCGAGAAGTTCTCGGAAGATGGTGAGAATGGAAGGCTGAGATACGGTTTGTCATCCATGCAAGGGTGGCGTGCCACAATGGAGGATGCTCATGCTGCATATCCTGATCTTGATGCCTCCGCATCATTCTTTGGTGTTTATGATGGTCATGGAGGTAAAGTAGTTGCCAAATTTTGTGCGAAGTATCTACACCAGCAAGTTCTGAAGAATGAAGCATATGCTGCAGGAGATACAAGAACTGCTTTACAACAAGCGTTTATCAGAATGGACGAAATGATGCGTGGGCAAAGGGGTTGGAGAGAGCTGGCTATTCTTGGAGATAAAATAAACAAGTTTACTGGTATGATAGAAGGGTTTATCTGGTCACCACGAAGCAACGATGTTAGTAACCAAGTCGACGATTGGGCTTTTGAAGAGGGCCCTCACTCTGATTTTACTGGTCCAACTTCCGGGTGCACGGCTTGTGTTTCAGTTATTAGAAACAACCAACTTCTTGTTGCAAATGCCGGTGACTCTCGTTGTGTGCTATCGAGGGCAGGCAAGGCTCAGAATATGTCTACTGATCACAAACCCGATCTTGAGGTTGAGAAGGAAAGGATTTTAGAAGCTGGTGGATTTATCCATGCTGGAAGAGTCAATGGTTGCTTGAATCTCGCCAGAGCAATTGGTGATGTGGAATTCAAGCAAAATAAATTTTTGCCTGCCGAAATGCAAATCGTGACTGCCCATCCTGATGTTACCGTGGCTGAGCTCAACAATGACGATGATTTTCTTGTGCTGGCATGTGATGGCATCTGGGATTGTATGTCTAGCCAACAACTTGTGGAGTTTATACACGAACAACTAAGAACGGAAAGCAAGCTGTCTGTGGTGTGTGAAAGAGTTCTGGACCGATGTTTAGCACCAACAGCGAGTGGGGACGGATGTGATAACATGACGATGATCTTAGTGCAGTTGAAGAAACAACCCACCACAAGTGGAGATGAACCATCTTCTCCCTCAACGTCCTCCGGGAGAAGAAATTGTTAA | 1056 | 45.55 | MGVYLSSPKIEKFSEDGENGRLRYGLSSMQGWRATMEDAHAAYPDLDASASFFGVYDGHGGKVVAKFCAKYLHQQVLKNEAYAAGDTRTALQQAFIRMDEMMRGQRGWRELAILGDKINKFTGMIEGFIWSPRSNDVSNQVDDWAFEEGPHSDFTGPTSGCTACVSVIRNNQLLVANAGDSRCVLSRAGKAQNMSTDHKPDLEVEKERILEAGGFIHAGRVNGCLNLARAIGDVEFKQNKFLPAEMQIVTAHPDVTVAELNNDDDFLVLACDGIWDCMSSQQLVEFIHEQLRTESKLSVVCERVLDRCLAPTASGDGCDNMTMILVQLKKQPTTSGDEPSSPSTSSGRRNC | 351 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 43708717 | 43712477 | - | Bda003173.1 | Bda01g01016 | 1016 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g01016 | 351 | SUPERFAMILY | PP2C-like | 3 | 330 | IPR036457 | - | |
| Bda01g01016 | 351 | MobiDBLite | consensus disorder prediction | 329 | 351 | - | - | |
| Bda01g01016 | 351 | Gene3D | - | 1 | 329 | IPR036457 | - | |
| Bda01g01016 | 351 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 338 | IPR015655 | GO:0004722|GO:0006470 | |
| Bda01g01016 | 351 | ProSitePatterns | PPM-type phosphatase domain signature. | 52 | 60 | IPR000222 | GO:0043169 | |
| Bda01g01016 | 351 | Pfam | Protein phosphatase 2C | 155 | 314 | IPR001932 | - | |
| Bda01g01016 | 351 | Pfam | Protein phosphatase 2C | 23 | 103 | IPR001932 | - | |
| Bda01g01016 | 351 | SMART | PP2C_4 | 13 | 326 | IPR001932 | - | |
| Bda01g01016 | 351 | ProSiteProfiles | PPM-type phosphatase domain profile. | 23 | 328 | IPR001932 | - | |
| Bda01g01016 | 351 | CDD | PP2Cc | 23 | 328 | IPR001932 | - | |
| Bda01g01016 | 351 | PANTHER | PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED | 1 | 338 | - | - | |
| Bda01g01016 | 351 | SMART | PP2C_SIG_2 | 28 | 328 | IPR001932 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda01g01016 | Bda03g00105 | CCT | |
| Bda01g01016 | Bda03g00105 | ECH | |
| Bda01g01016 | Bda13g01275 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01016 | Bda-Chr1:43708717 | Bda13g01275 | Bda-Chr13:35110645 | 1.19E-38 | dispersed | |
| Bda04g00787 | Bda-Chr4:57792619 | Bda01g01016 | Bda-Chr1:43708717 | 0 | transposed | |
| Bda01g01016 | Bda-Chr1:43708717 | Bda03g00105 | Bda-Chr3:950950 | 3.73E-161 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g01016 | K17499 | - | jre:109001007 | 583.178 |