Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01019 ATGGCAGACGTGGTGCTGACGGGGGAGATTGAAGCCACCGCCGCTCGGCTCGGAATCGATCTCTCCCAAATCGATCTTGACTCCATTCGCCTCCCTCCTGGTGAAGACTTCGGCATCATTAGTGATGATGAGGATGTTTTGCAAGAGGAGAATCTGGAGTTCGATACTGGATTTGGAAACATTATTGTTGTGGATAATCTTCCTGTTGTTCCCCGTGAAAAATTTGAGAAGCTTGAAGGTGTAATTCGCAAGATATACGGTCAAATTGGAATAATCAAGGAGGATGGTCTTTGGATGCCTGTTGATCCTGAGACACATAAAACTTTAGGTTACTGCTTCATTGAGTACAATACCCCCCAGGAAGCTGAACTTGCCAGGGAGAAAACAAATGGATACAAACTCGACAGAGCACACATATTTGCTGTTAGCATGTTTGAAGATTTTGATAAATTCATGAAGGTTCCTGATGAGTGGGTTACTCCTGAAAGCATTCCATACTCTCCGGGGGAGAATCTTCAAAGTTGGCTGACAGATGAGAAAGCTCGCGATCAGTTTGTGATTCGTGCTGGTAATGATACTGAAGTTTTATGGAATGATGCCAGACATATGAAGCCAGACCCTGTGTACAAGCGTACATTTTGGACTGAAGGATTTGTCCAATGGTCATCTTTTGGGAGTTACTTGGCAACAGTTCACCGCCAAGGTGCTGCTGTTTGGGGTGGTGCCAGCACCTTTAATCGCTTAATGCGTTATGCTCATCCTTTGGTTAAACTGATCGACTTTTCACCTGGTGAGAAATATTTAGTAACTTACAGTAGTCATGAACCAAGCAATCCTAGAGATGCTAATAGGATTGTGATCAACATATTTGATGTTAGAACTGGTAAAGTGATGCGGGATTTCAAGGGAAGTCCTGATGAATTTGCTGTTGGAGGAATAGGAGCTGTCACAGGAGTTTCTTGGCCAGTTTTCAGATGGGGTGGAAAGAATGATAAATATTTTGCCAGGATTGGAAAAAATATAATCTCTGTCTATGAAACAGAAACTTTTTCACTGGTTGACAAGAGATCTTTGAAGGTTGACAATGTCGTGGATTTTAGTTGGTCTCCGACTGATCCAATTCTTGCACTTTTTGTTCCTGAGCTAGGTGGCGGCAACCAACCTGCTAGGGTTAGCCTTGTCCAAATTCCTAGCAAAGAAGAAATTAGGCAGAAAAATCTTTTTAGTGTTAGTGATTGCAAAATGTATTGGCAAAGCAATGGAGATTATCTTGCTGTGAAGGTTGATCGTTATACAAAGACAAAAAAGAGCACATACACTGGATTTGAGCTTTTCCGCATCAAAGAACGTGACATTCCAATTGAGGTTTTGGAACTTGAAAACAAGAATGATAAAATTATTGCTTTTGCTTGGGAGCCCAAGGGCCACAGATTTGCTGTTATTCATGGTGATAACCCCAGACCAGACATAAGTTTTTACTCAATGCGAACTGCTCACAATACTGGTCGAGTTTCGAAGCTCACCACTCTCAAAGGGAAACAAGCAAATGCTCTTTTCTGGTCACCAGCTGGGCGTTTTATTATTCTTGCTGGACTAAAGGGTTTCAACGGACAGCTTGAGTTTTATAATGTTGATGAGCTTGAAACCATGGCTACAGCTGAGCATTTCATGGCGACAGACATTGAATGGGATCCCACTGGAAGGTATGTTGCAACTTCTGTGACATCTGTTCATGAGATGGAAAATGGTTTCAACATATGGTCTTTTAATGGAAAGCTACTGTATAGAATATTGAAGGATCATTTCTATCAGTTCTCGTGGCGGCCAAGGCCACTATCGGTGTTATCAGCTGAGAAAGAGGAGGAGATAGCTAAGAACTTGAAGAAGTACAGCAAGAAGTACGAAGCAGAAGACCAAGACGTGTCAATGCTGTTAAGCGAGCAGGATCGGGAGAAACGGAAGAAGTTGAAGGATGAATGGGATAAATGGGTGGGCGAGTGGAAAAGGCTGCATGAAGAAGAAAAACTGTGGAGGCAGAAACTGAGGGATGGTGAAGCCAGTGATGAAGAAGAAGAAGAATACGAAGCGAAAGAGGTTGAAGTTGAGGAGATTCTTGATGTTGTGGAGGAGGTTGTTGATCTTGAAGAGTAA 2151 42.58 MADVVLTGEIEATAARLGIDLSQIDLDSIRLPPGEDFGIISDDEDVLQEENLEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYGQIGIIKEDGLWMPVDPETHKTLGYCFIEYNTPQEAELAREKTNGYKLDRAHIFAVSMFEDFDKFMKVPDEWVTPESIPYSPGENLQSWLTDEKARDQFVIRAGNDTEVLWNDARHMKPDPVYKRTFWTEGFVQWSSFGSYLATVHRQGAAVWGGASTFNRLMRYAHPLVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDEFAVGGIGAVTGVSWPVFRWGGKNDKYFARIGKNIISVYETETFSLVDKRSLKVDNVVDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEEIRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRTAHNTGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFYQFSWRPRPLSVLSAEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKKLKDEWDKWVGEWKRLHEEEKLWRQKLRDGEASDEEEEEYEAKEVEVEEILDVVEEVVDLEE 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43754752 43758722 + Bda003176.2 Bda01g01019 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01019 716 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bda01g01019 716 SUPERFAMILY DPP6 N-terminal domain-like 219 600 - -
Bda01g01019 716 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bda01g01019 716 PIRSF Transl_init_eIF3b 6 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bda01g01019 716 Coils Coil 617 637 - -
Bda01g01019 716 Gene3D - 410 631 IPR015943 GO:0005515
Bda01g01019 716 PANTHER BNACNNG51870D PROTEIN 8 713 - -
Bda01g01019 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Bda01g01019 716 Gene3D - 59 143 IPR012677 -
Bda01g01019 716 SUPERFAMILY RNA-binding domain, RBD 52 140 IPR035979 GO:0003676
Bda01g01019 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Bda01g01019 716 CDD RRM_eIF3B 59 142 IPR034363 -
Bda01g01019 716 Coils Coil 687 707 - -
Bda01g01019 716 Gene3D - 181 382 IPR015943 GO:0005515
Bda01g01019 716 Pfam Eukaryotic translation initiation factor eIF2A 405 605 IPR013979 -
Bda01g01019 716 SMART rrm1_1 61 142 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01019 Bda-Chr1:43754752 Bda01g01471 Bda-Chr1:50635995 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01019 K03253 - csv:101213144 1282.7