Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g01045 | ATGAGCTTCCAAGATTTTCAAAATCAGAATGTAGGTAGGACAAAGCCTGCCGCTGCTCAGAACCCGTCGCAGGCTGTAGCTGGGTCCATATTTCAGATCAACACCGCTGTTTCCACCTATCGTCGTCTTGTTGATGCCATTGGTACCGTGAAGGATACTCCAGATCACCGGCAGAAGCTCCAGGCAACCAGGCAGAGAATTCTGCAACTCGTGAAAGATACTTCGCCCAAACTAAAAGCATTGAGTGAATCCGATCGCGACAGTCATATCACTCCAAACAAGAAAATTGAAGATGCTAAACTGGCCAGAGATTTTCAAACTGTTCTGCAAGAATTCCAGAAAGTTCAACAGCTTTCCTCAGAGCGTGAATCAACATACGCACCTTCTGGTCCTCCATTGCCAACTCTATCAGTAGACAGCTCTGGCTCCAGTGAACCTACAATGAATCAGGACACCCAACCTTTCCTCATGCAGCAAAAAAGGCAAGAGTTGATCCTGCTAGATAATGAAATTGCTTTCAATGAAGCTATAATTGAAGAGAGGGAGCAGGGTATCAAGGAAATACAGGAGCAAATTGTAGAAGTCAATGAAATATTCAGGGACCTTGCTGTACTAGTTCATGATCAGGGCGGGGTTATTGGTGATATTCACTCCAACATTGACTCCTCTGCGGCTGCAACCACTGAAGCTCGAGTTCAGCTGGGTAAGGCTTCCAAAAGCACAAAAACCAGAACCTCATTGTGCTGGTGGGTGCTCGGGATCGTAGTAGTAGTGGTGGTTGTCGTTCTTCTCGTTGTTCTCTTGTAG | 807 | 46.1 | MSFQDFQNQNVGRTKPAAAQNPSQAVAGSIFQINTAVSTYRRLVDAIGTVKDTPDHRQKLQATRQRILQLVKDTSPKLKALSESDRDSHITPNKKIEDAKLARDFQTVLQEFQKVQQLSSERESTYAPSGPPLPTLSVDSSGSSEPTMNQDTQPFLMQQKRQELILLDNEIAFNEAIIEEREQGIKEIQEQIVEVNEIFRDLAVLVHDQGGVIGDIHSNIDSSAAATTEARVQLGKASKSTKTRTSLCWWVLGIVVVVVVVVLLVVLL | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 44543749 | 44545834 | - | Bda003209.1 | Bda01g01045 | 1045 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g01045 | 268 | MobiDBLite | consensus disorder prediction | 119 | 149 | - | - | |
| Bda01g01045 | 268 | Coils | Coil | 178 | 198 | - | - | |
| Bda01g01045 | 268 | Gene3D | - | 169 | 268 | - | - | |
| Bda01g01045 | 268 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Bda01g01045 | 268 | SUPERFAMILY | t-snare proteins | 20 | 230 | IPR010989 | GO:0016020|GO:0016192 | |
| Bda01g01045 | 268 | Pfam | SNARE domain | 214 | 263 | IPR000727 | - | |
| Bda01g01045 | 268 | Pfam | Syntaxin-like protein | 28 | 126 | IPR006011 | GO:0016020 | |
| Bda01g01045 | 268 | PANTHER | SYNTAXIN | 17 | 266 | IPR045242 | - | |
| Bda01g01045 | 268 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 175 | 237 | IPR000727 | - | |
| Bda01g01045 | 268 | SMART | tSNARE_6 | 170 | 237 | IPR000727 | - | |
| Bda01g01045 | 268 | Gene3D | - | 9 | 129 | - | - | |
| Bda01g01045 | 268 | CDD | SNARE_Qa | 178 | 236 | - | - | |
| Bda01g01045 | 268 | PANTHER | SYNTAXIN-22-LIKE | 17 | 266 | - | - | |
| Bda01g01045 | 268 | SMART | SynN_4 | 11 | 124 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01045 | Bda-Chr1:44543749 | Bda13g01915 | Bda-Chr13:43552402 | 3.52E-128 | dispersed | |
| Bda01g01045 | Bda-Chr1:44543749 | Bda13g01908 | Bda-Chr13:43429316 | 4.41E-73 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g01045 | - | K08488 | rcn:112187643 | 315.849 |