Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01056 ATGGAGCGGGAGCTTCAGAGTCCGGAGCTGGGTAAAGCCACCAATTTAGAAGGGAGCGGGAGCAGAGTTAACCGTGGGTCTGATCGTTTCGGGTTGGCCCGAGATCTTGTCACCGACTGTGGCGTCCATAGGAAGAAGCGGATGGCCAGGCAGAGACGATCCTCCATTCTCAACTTCCATCTCTCCTTCTCTTCCTCCAGCCCTCACGTGCCAACCTCTTCAGTAATTGATCCAAGGCAGCTCAGATTCCTTTTTCAGAAGGAGCTGAAAAACAGTGATGTCAGCTCTCTCAAGAGAATGATACTCCCAAAGAAAGCAGCTGAGACTCATCTTCCTGTTCTTGAATCAAAGGAAGGCATTCTTATCAACATGGATGACTTGGATGGTCTTCACGTTTGGAGCTTCAAGTACAGCAGGTTTTGGCCTAACAACAACAGCCGAATGTATGTGCTCGAAAACACCGGGGACTTTGTTAACGCCCATGATTTACAGCTAGGAGACCTCATCTTAGTCTACCAAGATGTTCAAAATCAAAATTATGTAATTCAAGCGAAAAAGACTTCGGACGAAGAAATATTCGGCGACATAACGGGAAGCAACACCAACATCAATCCGAATGATGAGTTACTTTTTAACGATAACTTCGAGTTTATGAACAAGCCCTCCAACACTTTCTTCTCCGTGAATTGGCCGTCCATTGACGATGATCAAGGCATGTCCTTCGTGTATGACACAACGACCTTCTCAAATGACTATCTGTTGGACTTTCTGGGTGGGCCTATGACCAGCTACTCCAGACCAGTGGCGACTCCAGAAGGGTTTGGGTCGGTTGAAAACTTGTCTCTTGATGATTTCTATGGCTTTTAA 867 46.6 MERELQSPELGKATNLEGSGSRVNRGSDRFGLARDLVTDCGVHRKKRMARQRRSSILNFHLSFSSSSPHVPTSSVIDPRQLRFLFQKELKNSDVSSLKRMILPKKAAETHLPVLESKEGILINMDDLDGLHVWSFKYSRFWPNNNSRMYVLENTGDFVNAHDLQLGDLILVYQDVQNQNYVIQAKKTSDEEIFGDITGSNTNINPNDELLFNDNFEFMNKPSNTFFSVNWPSIDDDQGMSFVYDTTTFSNDYLLDFLGGPMTSYSRPVATPEGFGSVENLSLDDFYGF 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44728740 44730999 + Bda003222.1 Bda01g01056 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01056 288 Pfam B3 DNA binding domain 85 183 IPR003340 GO:0003677
Bda01g01056 288 Gene3D - 81 195 IPR015300 -
Bda01g01056 288 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 43 286 - -
Bda01g01056 288 ProSiteProfiles B3 DNA-binding domain profile. 85 188 IPR003340 GO:0003677
Bda01g01056 288 MobiDBLite consensus disorder prediction 1 27 - -
Bda01g01056 288 CDD B3_DNA 83 186 IPR003340 GO:0003677
Bda01g01056 288 SMART B3_2 85 188 IPR003340 GO:0003677
Bda01g01056 288 SUPERFAMILY DNA-binding pseudobarrel domain 83 182 IPR015300 -
Bda01g01056 288 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 286 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01056 Bda-Chr1:44728740 Bda12g00689 Bda-Chr12:33397373 3.51E-34 dispersed
Bda01g01056 Bda-Chr1:44728740 Bda07g01526 Bda-Chr7:28386869 4.73E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15414 PF02362 B3 2.70E-15 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01056 - - tcc:18601105 312.383