Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01090 ATGGATTTATCAACCAAACCATCTGAGTGTGATTGTTTGGCTGGTCTGGAGTGCCTGTTAAGCATTATCAGGGCCCTCCAAATGGGGTCCCGCTTCTCGGCAGAGAGCAAGAGCCCTCTGCCTGGGTCACCTATGTCTCCGTCCCCAAGAGTCAGGAAAAACTCAAAGAAAAGACTTGTATCACAGAACCCTTCGTTTGATTATCGAAGGGATGAATCCCTGCATCGAGTTCCAGGAAGAATGTTCTTAAACGGATCTAGTGAGGTTGCTTCTCTATTTACTCAACAGGGTAAGAAAGGGGCCAACCAGGACGCCATGATTGTGTGGGAGAATTTTGCTTCCAGGTCGGATACATTATTTTGTGGAGTTTTCGATGGGCATGGCCCCTATGGCCATTTTGTCGCAAAAAGAGTGAGGAATTGTCTTCCTCTGAAACTCAGTGAACATCTGGAAGTTAATTCAATCAGTGAGGATGTTTTTAAAGAGATCAGTTTGAATACTGTAAGTATGAACTTCGAAGATACAGCTTTCGCATCGGCTGATGAAGAAGCAAGAGCCTCCATTGATGGCGATGAAACAAGCAAGCAGTCTGAGATTTCTAATTCTTTGAAGGAATCAATTCTTAAGGCTTTTAAGAATATGGACAGAGAACTGAGAATGCAGCGGAGGATAGACTGCTTCTTCAGTGGGACAACGGCAGTAACTCTTCTCAAGCAGGATCAAGATCTGATTATTGGAAATGTTGGAGACTCTAGGGCTGTTCTTGGTACGAGAGATGAAGATGATTTGCTTGTTGCAGTTCAGCTTACAGTTGATCTCAAGCCTGATCTTCCAGAAGAAGCAGAGAGAATCAAAAAGTGCAAAGGTCGAATATTTGCTCTTCGGGAAGAACCCGAGGTTGCTCGAGTGTGGCTTCCCAACAACGACTCCCCTGGTCTTGCCATGGCTCGGGCATTTGGAGATTTCTGCCTCAAGGATTTTGGTGTCATCGCCATTCCCGACATTTCATGTCGGCACCTCACTGATAAAGACGAGTTTGTCGTCTTGGCTACTGACGGGATATGGGATGTATTGTCAAACGAAGAGGTAGTAGACATTGTAGCTTCATCTCTGCGTCCAACTGCAGCTCGAGGTCTGGTCGAATCGGCGATCAAGGCATGGCGATGTAAATATCCAACATCAAAGATCGACGACTGTGCTGTTGTCTGTCTCTTTCTGAATGAAAACCCAAATCCTTCCTCAGCCGATTCCATCTCCAAACTCAAAGAAGAGCAAACTTCTAAAAACCATCTCCGCCCTGCAACTGAGAATCCAGTTTAG 1320 45.53 MDLSTKPSECDCLAGLECLLSIIRALQMGSRFSAESKSPLPGSPMSPSPRVRKNSKKRLVSQNPSFDYRRDESLHRVPGRMFLNGSSEVASLFTQQGKKGANQDAMIVWENFASRSDTLFCGVFDGHGPYGHFVAKRVRNCLPLKLSEHLEVNSISEDVFKEISLNTVSMNFEDTAFASADEEARASIDGDETSKQSEISNSLKESILKAFKNMDRELRMQRRIDCFFSGTTAVTLLKQDQDLIIGNVGDSRAVLGTRDEDDLLVAVQLTVDLKPDLPEEAERIKKCKGRIFALREEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGVIAIPDISCRHLTDKDEFVVLATDGIWDVLSNEEVVDIVASSLRPTAARGLVESAIKAWRCKYPTSKIDDCAVVCLFLNENPNPSSADSISKLKEEQTSKNHLRPATENPV 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45656495 45659248 + Bda003272.1 Bda01g01090 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01090 439 ProSiteProfiles PPM-type phosphatase domain profile. 89 406 IPR001932 -
Bda01g01090 439 SMART PP2C_4 78 404 IPR001932 -
Bda01g01090 439 MobiDBLite consensus disorder prediction 33 62 - -
Bda01g01090 439 SUPERFAMILY PP2C-like 85 408 IPR036457 -
Bda01g01090 439 Pfam Protein phosphatase 2C 187 385 IPR001932 -
Bda01g01090 439 MobiDBLite consensus disorder prediction 412 439 - -
Bda01g01090 439 Gene3D - 85 409 IPR036457 -
Bda01g01090 439 CDD PP2Cc 89 406 IPR001932 -
Bda01g01090 439 PANTHER ALPHABET, ISOFORM E-RELATED 28 427 - -
Bda01g01090 439 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 28 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01090 Bda-Chr1:45656495 Bda06g00320 Bda-Chr6:5253823 7.32E-133 dispersed
Bda13g00147 Bda-Chr13:1964013 Bda01g01090 Bda-Chr1:45656495 2.37E-28 dispersed
Bda01g01090 Bda-Chr1:45656495 Bda12g00309 Bda-Chr12:3395056 0 wgd
Bda01g01090 Bda-Chr1:45656495 Bda13g01843 Bda-Chr13:42548903 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01090 - - pvy:116141626 602.053