Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01103 ATGGCGTCTTCGTCTAATTCCCCTTGTGCAGCCTGCAAGTTTCTCCGCCGGAAATGTCAACCGGAGTGCGTTTTCGCGCCGTACTTTCCACCAGACCAACCCCAAAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCAAGCAACGTCACCAAGCTCCTCAACGAGCTCCATCCTCACCAGCGAGAAGACGCCGTCAACTCCCTTGCCTACGAGGCCGATATGCGTCTCAGAGATCCAGTCTATGGGTGCGTCGGCGTCATCTCCCTCCTCCAGCACCAGCTTCGCCAGCTTCAGATTGACCTCAGCTGCGCAAAATCTGAGCTTTCAAAATACCAAAACCTGGGTCTCGCCGGCCATGGCCTCATCGCAGCCGCCGCTGCCGCTGCCACTACGACTCATAACCACCATCTCCAGAACCTCGGAATCAACCTGATTGGCTCCGGGAAAGATTACCACCACCACCACCAGTTATTCCCTCGCGATCAGGCCCAGCCGATCATGAGGGGCTTCGACATTGCCGGAAACAGTGTCTACGACGGCGGCCTCCTAGCAATGAACGTCTCCGCAAGTTTAGGTCAACTCAGCCAGTTTCAGCAACCGAGGGCTGCCGGAGGCGATGATCACCGCCGAACAATCGATCCTTCTTAG 648 56.94 MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQNLGLAGHGLIAAAAAAATTTHNHHLQNLGINLIGSGKDYHHHHQLFPRDQAQPIMRGFDIAGNSVYDGGLLAMNVSASLGQLSQFQQPRAAGGDDHRRTIDPS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45777636 45778283 + Bda003284.1 Bda01g01103 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01103 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 181 - -
Bda01g01103 215 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Bda01g01103 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 181 - -
Bda01g01103 215 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Bda01g01103 215 Coils Coil 87 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01103 Bda-Chr1:45777636 Bda07g01123 Bda-Chr7:13134567 1.45E-79 dispersed
Bda01g00006 Bda-Chr1:294688 Bda01g01103 Bda-Chr1:45777636 5.20E-21 transposed
Bda11g01663 Bda-Chr11:50732063 Bda01g01103 Bda-Chr1:45777636 4.44E-52 transposed
Bda14g01169 Bda-Chr14:11021002 Bda01g01103 Bda-Chr1:45777636 3.98E-51 transposed
Bda15g00546 Bda-Chr15:8519291 Bda01g01103 Bda-Chr1:45777636 8.00E-53 transposed
Bda01g01103 Bda-Chr1:45777636 Bda13g01832 Bda-Chr13:42352205 1.32E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15417 PF03195 LOB 4.10E-43 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01103 - - rcu:8263444 342.428