Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01124 ATGGTGCTCTCCAGAGCTACATCTGAAAGCGATGTCTCCATCCACTCCACCTTCGCCTCCAGATACGTCAGAACTTCTCTTCCCAGGTTCCGAATGCCGGAAAATTCGATCCCGAAGGAGGCGGCGTACCAGATAATCAACGACGAGCTGATGCTGGACGGAAATCCGAGGCTGAATCTGGCGTCGTTCGTGACGACATGGATGGAGCCGGAGTGCGACAAGCTGATCATGTCCTCCATTAACAAGAACTACGTTGACATGGATGAATACCCGGTGACCACTGAGCTTCAGGCACTGAAATGGGGATGGTTTTGGTGGATGCAGAATCGATGTGTGAACATTATAGCTCACCTGTTCAATGCGCCGCTTGGAGAGTCAGAGACGGCGGTGGGCGTCGGAACGGTGGGGTCGTCGGAGGCCATCATGCTTGCCGGCTTGGCTTTCAAGCGAAAATGGCAGAACAGAAGGAAAGCAGAGGGCAAACCCTGTGATAAGCCCAACATCGTCACCGGAGCTAATGTCCAGGTTTGTTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAGGAGGTGAAGCTGAGGGAAGGGTATTATGTGATGGACCCAACGAAAGCGGTGGAGATGGTCGACGAGAACACCATCTGCGTCGCTGCAATTCTGGGTTCTACTCTCAACGGAGAATTCGAGGACGTCAAACTCTTGAACGATCTCCTGATCCAGAAAAACGAGCAAACTGGATGGGATACTCCTATTCACGTAGATGCTGCAAGCGGAGGGTTCATTGCTCCATTTCTTTACCCAGAGCTTGAGTGGGACTTCAGGCTGCCATTGGTGAAGAGCATTAACGTCAGCGGCCATAAATACGGACTCGTTTATGCCGGCATTGGATGGGTTATTTGGAGAAGCAAAGAGGATTTGCCTGAAGAACTCATTTTCCATATCAACTATCTTGGAGCAGATCAACCAACTTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCCCAGTATTACCAGCTTATTCGCTTAGGATACGAGGTTAGCTCTAAAATGCTCTTGACCAAGCATGACTCAAACACTTTTGTTTTGGATGCTATGACAGAGAGTGAGACTGTAACTGTGATCATTAAGAAGAGCAACGAGGAGGTCGAGAGGGAGGTGTCTACGATTTGGAAGAAGTTTGTGGCTAATAAGAAGAAGAAGAATGGTGTCTGCTAG 1227 49.31 MVLSRATSESDVSIHSTFASRYVRTSLPRFRMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQALKWGWFWWMQNRCVNIIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPTKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLIQKNEQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEVSSKMLLTKHDSNTFVLDAMTESETVTVIIKKSNEEVEREVSTIWKKFVANKKKKNGVC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46132233 46137359 + Bda003312.1 Bda01g01124 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01124 408 PANTHER GLUTAMATE DECARBOXYLASE 1 368 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bda01g01124 408 PANTHER GLUTAMATE DECARBOXYLASE 371 408 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bda01g01124 408 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 381 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bda01g01124 408 PANTHER GLUTAMATE DECARBOXYLASE 1 368 - -
Bda01g01124 408 PANTHER GLUTAMATE DECARBOXYLASE 371 408 - -
Bda01g01124 408 Gene3D - 1 65 - -
Bda01g01124 408 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 354 IPR002129 GO:0016830|GO:0019752|GO:0030170
Bda01g01124 408 Gene3D - 66 366 IPR015421 GO:0003824
Bda01g01124 408 SUPERFAMILY PLP-dependent transferases 16 355 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01124 Bda-Chr1:46132233 Bda12g00270 Bda-Chr12:2905253 0 dispersed
Bda01g01124 Bda-Chr1:46132233 Bda12g00269 Bda-Chr12:2872967 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01124 K01580 - egr:104449756 655.21